SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67141

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene67141
CGTCGTGACCTTGGCTGTCACTCAATTTTTTCAGTGATTTCTCCATGCTGTGAGTTGGGGGATTGTATGTATGATAGATTTCTTATTAGCTTAACCTGTCGGTGTTTGTATTTATCGGATCATATAACCATGAGGAAGAGCTGCAATGGCTGCCGAGTCCTGCGAAAGGGCTGTAGCCAATACTGCGTTCTCAGGCCCTGCCTCCAATGGATAAACACGGCAGAGTCGCAGGCGAACGCC

Ace file of the UniGene sp_v3.0_unigene67141

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein 40 n=5 Tax=Arabidopsis RepID=LBD40_ARATH	-	-	4.0e-11	81%
FL-Next	sp=LOB domain-containing protein 40; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Sma3	Seed specific protein Bn15D17A	-	-	2.273e-16	-

Source	Gene names
Sma3	ASL36; ASL37; ASL38; ASL39; ASL41; GSVIVT00017674001; GSVIVT00019643001; GSVIVT00030342001; GSVIVT00038218001; LBD37; LBD39; LBD40; LBD41; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; OSJNBb0005G07.123; Os01g0129600; Os01g0511000; Os03g0445700;

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67100.1	LBD40 LOB domain-containing protein 40 chr1:25053801-25054659 FORWARD LENGTH=233	3.0e-16	81%
RefSeq	Arabidopsis thaliana	NP_176881.1	LOB domain-containing protein 40 [Arabidopsis thaliana]	3.0e-16	81%
RefSeq	Populus trichocarpa	XP_002312397.1	predicted protein, partial [Populus trichocarpa]	5.0e-16	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZW96

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 58 - 233

Fln protein: MYDRFLISLTCRCLYLSDHITMRKSCNGCRVLRKGCSQYCVLRPCLQWINTAESQANA

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTCAGTGATTTCTCCATGCTGTGAGTTGGGGGATTGT_-_ATGTATGATAGATTTCTTATTAGCTTAACCTGTCGGTGTTTGTATTTATCGGATCATATAACCATGAGGAAGAGCTGCAATGGCTGCCGAGTCCTGCGAAAGGGCTGTAGCCAATACTGCGTTCTCAGGCCCTGCCTCCAATGGATAAACACGGCAGAGTCGCAGGCGAACGCC

Fln Alignment:

GG46A6U01CQNY6___MRKSCNGCRVLRKGCSQYCVLRPCLQWINTAESQANA
Q9ZW96_______________MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain