SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67104

Length: 330 nt

UniGene Fasta

>sp_v3.0_unigene67104
CGTCGTGACCTTGGCTGTCACTCATCACAAGGAACTGAAGTTACAATTCCAATCGCTGCAGTCCATCATGACAAAGAGCTGTGGGGACAAGATGCTAACGAGTTCAACCCACAAAGATTTTGTGAGGGAGTTTCCAAGGCCGTTAAGCATCCGATGGCGTTTATGCCTTTCGGGTTAGGACCCAGAATCTGCGTGGGTATGAATTTCTCCATGATTGAAGCCAAGGTTGCGTTGGCTATGATGTTGCAACGCTTCTCTTTTGCTCTTTCCCCAGCGTATGCCCATGCACCAGTTCAAATTTTCACAATTCGTCCACTTCACGGAGGGCAG

Ace file of the UniGene sp_v3.0_unigene67104

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cytochrome P450 [Lolium rigidum]	-	-	8.0e-33	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Cytochrome P450	-	-	4.877e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Secologanin synthase.	EC:1.3.3.9	-	1.69e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	Monoterpenoid biosynthesis	00902	1.69e-33	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.69e-33	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.69e-33	%
Sma3	Metabolic pathways	01100	1.69e-33	%
Sma3	Biosynthesis of secondary metabolites	01110	1.69e-33	%

Source	Gene names
Sma3	AT4g27710; At1g17060; At1g67110; At2g26710; At2g46950; At2g46960; At3g14610; At3g14610/MIE1.11; At3g14620; At3g14650; At3g14660; At3g14680; At3g14690; At4g27710; At5g24900; At5g24910; B1051E10.30; B1085F01.11; B1085F01.9; CL-8904; CYP709C1; CYP709F1; CYP7

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	steroid hydroxylase activity	GO:0008395	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-
Sma3	brassinosteroid metabolic process	GO:0016131	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26710.1	BAS1, CYP734A1, CYP72B1 Cytochrome P450 superfamily protein chr2:11380700-11383413 FORWARD LENGTH=520	2.0e-37	56%
RefSeq	Arabidopsis thaliana	NP_180239.1	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana]	3.0e-37	56%
RefSeq	Populus trichocarpa	XP_002332521.1	cytochrome P450 [Populus trichocarpa]	9.99967e-42	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 110 - 517

Fln protein: RRDLGCHSSQGTEVTIPIAAVHHDKELWGQDANEFNPQRFCEGVSKAVKHPMAFMPFGLGPRICVGMNFSMIEAKVALAMMLQRFSFALSPAYAHAPVQIFTIRPLHGGQ

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCACAAGGAACTGAAGTTACAATTCCAATCGCTGCAGTCCATCATGACAAAGAGCTGTGGGGACAAGATGCTAACGAGTTCAACCCACAAAGATTTTGTGAGGGAGTTTCCAAGGCCGTTAAGCATCCGATGGCGTTTATGCCTTTCGGGTTAGGACCCAGAATCTGCGTGGGTATGAATTTCTCCATGATTGAAGCCAAGGTTGCGTTGGCTATGATGTTGCAACGCTTCTCTTTTGCTCTTTCCCCAGCGTATGCCCATGCACCAGTTCAAATTTTCACAATTCGTCCACTTCACGGAGGGCAG

Fln Alignment:

GG46A6U01DROO7___GTEVTIPIAAVHHDKELWGQDANEFNPQRFCEGVSKAVKHPMAFMPFGLGPRICVGMNFSMIEAKVALAMMLQRFSFALSPAYAHAPVQIFTIRPLHGGQ
A9NWW9_______________GTQLLLPILAIHHDQCLWGNDANEFNPARFSEGIAKAVKHPLAFMPFGFGPRICVGQNFALLEAKVVLAMILQRFSFVTSPSYAHAPVMVVTVRPQHGAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain