SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67084

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene67084
CGTCGTGACCTTGGCTGTCACTCAATTGTTAAGGACACTGGAAATTGTAGCCCACGCTAACATGCGGTGTACTCTAAACCAGATCCCTTGCTCAGGTGATTTGTTAAGTACTTCAGGAATGCCTTTGGCTTTGATGGTGCAGCCATTTGCTTCTCCCTCATCCTTCAGAAGAACCAATTCAGGTAGTGGTATTTTGGAGAAAGTGGTCCTGTTCGATGCTCTCGTTGCAAAGGATACA

Ace file of the UniGene sp_v3.0_unigene67084

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein transport protein Sec24-like CEF n=4 Tax=Arabidopsis RepID=SC24C_ARATH	-	-	3.0e-11	80%
FL-Next	sp=Protein transport protein Sec24-like CEF; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%

Source	Gene names
Sma3	At3g44340; At4g32640; CEF; F4D11.160; GSVIVT00027410001; LOC_Os11g29200; LOC_Os12g24250; Os12g0430000; OsI_36108; OsI_38153; OsJ_33894; OsJ_35930; PHYPADRAFT_126303; PHYPADRAFT_76562; POPTRDRAFT_1112669; POPTRDRAFT_729791; RCOM_1428540; T22K7_20;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	COPII vesicle coat	GO:0030127	Cellular Component	-
Sma3	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G44340.1	CEF clone eighty-four chr3:16011923-16019873 REVERSE LENGTH=1096	1.0e-13	80%
RefSeq	Arabidopsis thaliana	NP_566869.1	transport protein sec24-like CEF [Arabidopsis thaliana]	1.0e-13	80%
RefSeq	Populus trichocarpa	XP_002319053.1	predicted protein, partial [Populus trichocarpa]	8.0e-11	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M291

Fln msg: Separated hits, possible frame ERROR between 151 and 193, Distance to subject end: 657 aas, your sequence is shorter than subject: 79 - 1096

Fln protein: VVTLAVTQLLRTLEIVAHANMRCTLNQIPCSGDLLSTSGMPLALMVQPFxxxxxxxxxxxxxxxFGESGPVRCSRCKGY

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTAAGGACACTGGAAATTGTAGCCCACGCTAACATGCGGTGTACTCTAAACCAGATCCCTTGCTCAGGTGATTTGTTAAGTACTTCAGGAATGCCTTTGGCTTTGATGGTGCAGCCATTTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTGGAGAAAGTGGTCCTGTTCGATGCTCTCGTTGCAAAGGATACA

Fln Alignment:

GG46A6U01CK75B___MRCTLNQIPCSGDLLSTSGMPLALMVQPFAxxxxxxxxxxxxxxFGESGPVRCSRCKGY
Q9M291_______________MRCTINQIPCTVDLLSTSGMQLALIVQPMAxxxxxxxxxxxxxxFGESGPVRCSRCKGY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain