SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67019

Length: 457 nt

UniGene Fasta

>sp_v3.0_unigene67019
CGTCGTGACCTTGGCTGTCACTCAGTTGATTGGTGGAGTGTTGGAATTCTACTCTATGAGATGCTCAATGGACAACGTCCCTTCACTGGTAACAACCGCCAGAAGGTACAAAATAAAATCATCAAGGATAAAGTTAAATTGCCACCATTTTTTAGCAGTGAAGCCCATTCATTGCTGAAAGGCCTGCTACAGAAGGATCCAAGCAAGCGGCTAGGCAGCGGAGCAAGTGGGAGTGATGAAATCAAAGGACACAAGTGGTTCAAATCAATGAGCTGGAAGAAACTGGAAGCCAGGCAGATACAGCCAGCATTTAAACCTGATGTTAAGGGACTGTTGCACCGCTAATTTTGATGGCCGTTGGACCAACATGCCTCTTGATGATAATGAGCCGCCTTCAACTCCAAAAGCTGACAATGATCAACACCATTCGCAGTGAGTGACAGGCCACTGAGACTGC

Ace file of the UniGene sp_v3.0_unigene67019

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ribosomal-protein S6 kinase-like protein [Solanum lycopersicum]	-	-	9.99967e-42	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Serine/threonine-protein kinase AtPK19	-	-	4.18e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein kinase C.	EC:2.7.11.13	-	7.131e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		7.131e-06	%

Source	Gene names
Sma3	AT3G08720; ATPK1; ATPK19; ATPK6; Aspk11; At3g08720; At3g08730; F17O14.19; F17O14.20; GSVIVT00016180001; GSVIVT00037509001; LES1_20t00005; LOC_Os03g21620; OSJNBa0008J01.16; OSTLU_3119; Os03g0334000; Os07g0680900; OsI_11445; OsI_27353; OsJ_10738; OsJ_25599;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	positive regulation of translation	GO:0045727	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08720.1	ATPK19, ATS6K2, S6K2, ATPK2 serine/threonine protein kinase 2 chr3:2648625-2650407 REVERSE LENGTH=471	2.8026e-45	67%
RefSeq	Arabidopsis thaliana	NP_850543.1	serine/threonine protein kinase 2 [Arabidopsis thaliana]	2.8026e-45	67%
RefSeq	Populus trichocarpa	XP_002318010.1	predicted protein [Populus trichocarpa]	0.0	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2E8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 45 aas, putative chimeric sequence, your sequence is shorter than subject: 115 - 192

Fln protein: RRDLGCHSVDWWSVGILLYEMLNGQRPFTGNNRQKVQNKIIKDKVKLPPFFSSEAHSLLKGLLQKDPSKRLGSGASGSDEIKGHKWFKSMSWKKLEARQIQPAFKPDVKGLLHR*

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGATTGGTGGAGTGTTGGAATTCTACTCTATGAGATGCTCAATGGACAACGTCCCTTCACTGGTAACAACCGCCAGAAGGTACAAAATAAAATCATCAAGGATAAAGTTAAATTGCCACCATTTTTTAGCAGTGAAGCCCATTCATTGCTGAAAGGCCTGCTACAGAAGGATCCAAGCAAGCGGCTAGGCAGCGGAGCAAGTGGGAGTGATGAAATCAAAGGACACAAGTGGTTCAAATCAATGAGCTGGAAGAAACTGGAAGCCAGGCAGATACAGCCAGCATTTAAACCTGATGTTAAGGGACTGTTGCACCGCTAA___TTTTGATGGCCGTTGGACCAACATGCCTCTTGATGATAATGAGCCGCCTTCAACTCCAAAAGCTGACAATGATCAACACCATTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

GG46A6U01BWF4T___SVDWWSVGILLYEMLNGQRPFTGNNRQKVQNKIIKDKVKLPPFFSSEAHSLLKGLLQKDPSKRLGSGASGSDEIKGHKWFKSMSWKKLEARQIQPAFKPDVKG
A9P2E8_______________SADWWSVGILLYEMLTGQPPYTNNNRHKLQEKIIKEKIKLPSYLTSEVHSLLKGLLQKDPSKRIGSGANGSDEIKRHKWFKVINWRKLEAREIQPNFRPNVSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain