SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene67005

Length: 259 nt

UniGene Fasta

>sp_v3.0_unigene67005
CGTCGTGACCTTGGCTGTCACTCAGCTAGGTTCTCAGAGGGGAAAGGAAAATGCCACTGCAGCTTTACTGCAACTTTGTACAAATAGCAATAGGTTTCGTGCTATGGTTTTACAAGAAGGAGCTATTCCACCTTTGGTTGCATTATCACAATCTGGCACTCCACGGGCTAGAGAAAAGGCACAGGCACTTCTTCGTCATTTTAGAGATCAGAGGCATTCAGGTATAGGAAGGGGTGGCTCAGATAGGCAGATGGATCGG

Ace file of the UniGene sp_v3.0_unigene67005

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arm repeat-containing protein n=1 Tax=Nicotiana tabacum RepID=Q84TU4_TOBAC	-	-	8.0e-25	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	At2g23140; At3g54790; At5g67340; B1065E10.53; GSVIVT00019617001; GSVIVT00028576001; K8K14.6; OJ1060_D03.106; OJ1127_E01.131; Os01g0884400; Os07g0584900; Os08g0110500; OsI_04691; OsI_26648; OsI_27558; OsJ_04318; OsJ_24909; OsJ_25785; P0007D08.34; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23140.1	RING/U-box superfamily protein with ARM repeat domain chr2:9845696-9849105 REVERSE LENGTH=829	3.0e-30	79%
RefSeq	Arabidopsis thaliana	NP_001189583.1	RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana]	4.0e-30	79%
RefSeq	Populus trichocarpa	XP_002306495.1	predicted protein [Populus trichocarpa]	2.0e-30	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A903

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 86 - 371

Fln protein: VVTLAVTQLGSQRGKENATAALLQLCTNSNRFRAMVLQEGAIPPLVALSQSGTPRAREKAQALLRHFRDQRHSGIGRGGSDRQMDR

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTAGGTTCTCAGAGGGGAAAGGAAAATGCCACTGCAGCTTTACTGCAACTTTGTACAAATAGCAATAGGTTTCGTGCTATGGTTTTACAAGAAGGAGCTATTCCACCTTTGGTTGCATTATCACAATCTGGCACTCCACGGGCTAGAGAAAAGGCACAGGCACTTCTTCGTCATTTTAGAGATCAGAGGCATTCAGGTATAGGAAGGGGTGGCTCAGATAGGCAGATGGATCGG

Fln Alignment:

GG46A6U01BPST9___VTQLGSQRGKENATAALLQLCTNSNRFRAMVLQEGAIPPLVALSQSGTPRAREKAQALLRHFRDQRHSGI
D5A903_______________ILDTGTPNAQEQAAASLLLLCTNSFEHSQMVLREGVIPSLVTLSMNGSPRGRDKAQKLLQHFREQRQRDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain