SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66999

Length: 194 nt

UniGene Fasta

>sp_v3.0_unigene66999
CGTCGTGACCTTGGCTGTCACTCAGCTTCTGCATATGTGCTGCTATCAAACATCTTTGCTGCAGCTGGCAGGTGGGATGATGTAGCAAAAGTGAGAAAGTTGATGAAAGACAATGGGGTCAGAAAGGAACCAGGACGCAGCTGGATCAAGGTGAATGGAAGCTTGCATACCTTTGCTGTCAGAGACAGATCACA

Ace file of the UniGene sp_v3.0_unigene66999

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Pentatricopeptide repeat protein	-	-	2.393e-08	-

Source	Gene names
Sma3	GSVIVT00014458001; GSVIVT00016595001; GSVIVT00024125001; GSVIVT00032298001; OJ1047_C01.17; OSJNBb0005G07.111; OsJ_24934; PHYPADRAFT_191892; PHYPADRAFT_192620; PHYPADRAFT_192787; POPTRDRAFT_550938; PPR; VITISV_016538; VITISV_032470;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68930.1	pentatricopeptide (PPR) repeat-containing protein chr1:25918314-25920545 FORWARD LENGTH=743	1.0e-15	48%
RefSeq	Arabidopsis thaliana	NP_177059.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-15	48%
RefSeq	Populus trichocarpa	XP_002306801.1	predicted protein [Populus trichocarpa]	1.0e-17	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 64 - 246

Fln protein: RRDLGCHSASAYVLLSNIFAAAGRWDDVAKVRKLMKDNGVRKEPGRSWIKVNGSLHTFAVRDRS

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTCTGCATATGTGCTGCTATCAAACATCTTTGCTGCAGCTGGCAGGTGGGATGATGTAGCAAAAGTGAGAAAGTTGATGAAAGACAATGGGGTCAGAAAGGAACCAGGACGCAGCTGGATCAAGGTGAATGGAAGCTTGCATACCTTTGCTGTCAGAGACAGATCACA

Fln Alignment:

GG46A6U01DB9E0___HSASAYVLLSNIFAAAGRWDDVAKVRKLMKDNGVRKEPGRSWIKVNGSLHTFAVRDRS
D5AAE0_______________HNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain