SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66910

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene66910
CACAGTAGAGGAAGGGGGAATTTGTGTAGATCAACTCTTCTTCCATGACCCAGATGGGTTCATGATTGAGATCTGCAACTGCGAGAATATGCCGGTAGTGCCCTTGGCTTCTACGCCATCTGCACCTTGCATTCTCAACTCGTGTCAATCCCAGCAACAGAAGCAGATATCAACACCATATTCTGCATCTTCTGCAGACACTCCTAATACTTCTCGACAAATTCTCCAAGTTCTTTAGGGAAA

Ace file of the UniGene sp_v3.0_unigene66910

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] ref\|NP_001031049.1\| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] gb\|AAD39666.1\|AC007591_31 Is a member of the PF\|00903 gyloxalase family. ESTs gb\|T4	-	-	5.0e-12	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Lactoylglutathione lyase, putative	-	-	2.912e-11	-

Source	Gene names
Sma3	AT1G15380; AT1G80160; At1g15380; At1g80160; F18B13.24; F9L1.33; GSVIVT00000378001; GSVIVT00000379001; GSVIVT00016866001; GSVIVT00035399001; GSVIVT00036876001; MtrDRAFT_AC148340g32v2; OSJNBa0011L07.2; OSJNBa0089K24.11; OSJNBa0091D06.24; Os01g0173600; Os04g

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	0.0	-
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15380.1	Lactoylglutathione lyase / glyoxalase I family protein chr1:5290955-5292287 FORWARD LENGTH=174	3.0e-17	61%
RefSeq	Arabidopsis thaliana	NP_001031049.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	3.0e-17	61%
RefSeq	Populus trichocarpa	XP_002298106.1	predicted protein [Populus trichocarpa]	4.0e-19	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1X4

Fln msg: your sequence is shorter than subject: 79 - 197

Fln protein: TVEEGGICVDQLFFHDPDGFMIEICNCENMPVVPLASTPSAPCILNSCQSQQQKQISTPYSASSADTPNTSRQILQVL*

Protein Length: 80

Fln nts: CACAGTAGAGGAAGGGGGAATTTGTGTAGATCAACTCTTCTTCCATGACCCAGATGGGTTCATGATTGAGATCTGCAACTGCGAGAATATGCCGGTAGTGCCCTTGGCTTCTACGCCATCTGCACCTTGCATTCTCAACTCGTGTCAATCCCAGCAACAGAAGCAGATATCAACACCATATTCTGCATCTTCTGCAGACACTCCTAATACTTCTCGACAAATTCTCCAAGTTCTTTAG___GGAAA

Fln Alignment:

GG46A6U01BMD5J___TVEEGGICVDQLFFHDPDGFMIEICNCENMPVVPLASTPSAPCILNSCQSQ--------QQKQISTPYSASSADTPNTSRQILQV
A9P1X4_______________TVEEGGISVDQLFFHDPDDFMIEICNCDNLPVEYLGSAGSA-CPLN-CHSNASSTNAALQQQQI----SASCASAATISHQMLRV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain