SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66895

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene66895
CGTCGTGACCTTGGCTGTCACTCATATCTGTGCTATGGACTTCATATTATGCTTAATGTGGTAGCAGACAAAGAGGGTGTTGGTGCAGCTGTTCTTATTCGTTCCTGTGCTCCTGTTTCTGGTTTGGAGACTATACAACATCGGAGAGGTCAGACAACGAACAAGCCCATTCTACTTACTGGGCCAGGCAAGGTTGGTAAATCATTTCCTTGTTTGTGTCTTGGCTATTTAGGTAAGTTGCA

Ace file of the UniGene sp_v3.0_unigene66895

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0774500 protein n=3 Tax=Oryza sativa RepID=Q0DX49_ORYSJ	-	-	5.0e-23	86%
FL-Next	sp=DNA-3-methyladenine glycosylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%
Sma3	DNA-3-methyladenine glycosylase	-	-	7.054e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-3-methyladenine glycosylase II.	EC:3.2.2.21	-	4.232e-09	-

Source	Gene names
Sma3	At3g12040; GSVIVT00025403001; MAG; MEC18.17; OJ1448_G06.11; Os02g0774500; OsI_09129; OsJ_08564; POPTRDRAFT_835435; RCOM_0278080; T21B14.14; T21B14_115;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	alkylbase DNA N-glycosylase activity	GO:0003905	Molecular Function	-
Sma3	base-excision repair	GO:0006284	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Methylpurine-DNA glycosylase (MPG)	IPR003180	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) chr3:3835349-3836781 REVERSE LENGTH=254	5.0e-29	80%
RefSeq	Arabidopsis thaliana	NP_187811.1	DNA-3-methyladenine glycosylase [Arabidopsis thaliana]	7.0e-29	80%
RefSeq	Populus trichocarpa	XP_002323332.1	predicted protein [Populus trichocarpa]	5.0e-29	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39147

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 80 - 254

Fln protein: RRDLGCHSYLCYGLHIMLNVVADKEGVGAAVLIRSCAPVSGLETIQHRRGQTTNKPILLTGPGKVGKSFPCLCLGYLGKL

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATCTGTGCTATGGACTTCATATTATGCTTAATGTGGTAGCAGACAAAGAGGGTGTTGGTGCAGCTGTTCTTATTCGTTCCTGTGCTCCTGTTTCTGGTTTGGAGACTATACAACATCGGAGAGGTCAGACAACGAACAAGCCCATTCTACTTACTGGGCCAGGCAAGGTTGGTAAATCATTTCCTTGTTTGTGTCTTGGCTATTTAGGTAAGTTGCA

Fln Alignment:

GG46A6U01ET7VA___YLCYGLHIMLNVVADKEGVGAAVLIRSCAPVSGLETIQHRRGQTTNKPILLTGPGKVGKS
Q39147_______________YLCYGLHMMLNIVADKEGVGAAVLIRSCSPVSGMETIQERRGLKTDKPVLLNGPGKVGQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain