SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66844

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene66844
CGTCGTGACCTTGGCTGTCACTCAATTTATTGGTGTTCTGTCAGCATGTAGCCATTCTGGCCTAGTCAATGAAGGTCAGCGCCATTTTCATTCCATGAATCAAGATAATGACATCCCACCAGAGGCAGATCACTACACTTGCATGGTTGACCTTCTTGGCCGTGCTGGTCACCTTGATGAGGCAAATAAATTGATTGAAAGTATGCCATGTCAACCTGATGCTGTTGTGTGGGGAGCATTGCTTGGTGCTTGTCAACTTCATGTAAATATGGAGATAGGGAAATTTGCAGCAGAACGTCCTTTTTGAGTTGGAACCTCAGAATGCTGCTGCATATGTATCTCTGTCAAACATTTA

Ace file of the UniGene sp_v3.0_unigene66844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	2.0e-28	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Tetratricopeptide-like helical	-	-	2.228e-09	-

Source	Gene names
Sma3	At1g50270; At1g74400; At1g74600; At2g01510; At2g13600; At2g22070; At2g29760; At3g11460; At3g46790; At3g49170; At3g49710; At4g02750; At4g13650; At4g14820; At4g16835; At4g33990; At5g08510; At5g39350; At5g40410; At5g44230; At5g48910; At5g66520; B1032F05.19;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	2.0e-33	60%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-33	60%
RefSeq	Populus trichocarpa	XP_002310520.1	predicted protein [Populus trichocarpa]	7.0e-34	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 159 aas, your sequence is shorter than subject: 102 - 514

Fln protein: VVTLAVTQFIGVLSACSHSGLVNEGQRHFHSMNQDNDIPPEADHYTCMVDLLGRAGHLDEANKLIESMPCQPDAVVWGALLGACQLHVNMEIGKFAAERPF*

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTATTGGTGTTCTGTCAGCATGTAGCCATTCTGGCCTAGTCAATGAAGGTCAGCGCCATTTTCATTCCATGAATCAAGATAATGACATCCCACCAGAGGCAGATCACTACACTTGCATGGTTGACCTTCTTGGCCGTGCTGGTCACCTTGATGAGGCAAATAAATTGATTGAAAGTATGCCATGTCAACCTGATGCTGTTGTGTGGGGAGCATTGCTTGGTGCTTGTCAACTTCATGTAAATATGGAGATAGGGAAATTTGCAGCAGAACGTCCTTTTTGAGTTGGAACCTCAGAATGCTGCTGCATATGTATCTCTGTCAAACATTTA

Fln Alignment:

GG46A6U01CCOAI___FIGVLSACSHSGLVNEGQRHFHSMNQDNDIPPEADHYTCMVDLLGRAGHLDEANKLIESMPCQPDAVVWGALLGACQLHVNMEIGKFAAE
D5AD86_______________FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain