SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66839

Length: 419 nt

UniGene Fasta

>sp_v3.0_unigene66839
CGTCGTGACCTTGGCTGTCACTCACTGTTGAAAATATTGAGGGGCTCAAATCCGTCATCAGAACACTCCCCATATTTTCCTGCGGAATTGCCAATCAAATCACAAACGCACAGTATCACACGTTCTCCGTTTTGCAGGCCCTAAGCATGGACCGGCGGATAGGCTCCACGGGTTTCGAAATACCAGCGGGATCATTCTCGGTTTTCTCTCTGCTTGTTCTCATCGTATGGCTGCCATTTTACGACAGGGTTGTTGTGCCCTATGCCAGGCGCAGAACAAAGAATAACAGGGGTATCACCGTGTTTCAAAGACTGGGTATCGGATTCGCCATTTCATCGTCATCTATGTTGGCAGCCGGTTTAGTAGAAGTGAAGAGACGGAGTGCCACTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Ace file of the UniGene sp_v3.0_unigene66839

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nitrate transporter, putative n=1 Tax=Ricinus communis RepID=B9RUL8_RICCO	-	-	8.0e-28	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Nitrate transporter, putative	-	-	2.836e-06	-

Source	Gene names
Sma3	At1g68570; At1g69870; F24J5.19; GSVIVT00030327001; NRT1-4; OJ1001_B06.7; OSJNBa0037N01.54; Os01g0142800; Os01g0913300; Os06g0264500; Os12g0638300; OsI_00345; OsI_22454; OsI_39275; OsJ_00327; OsJ_04516; OsJ_20894; OsJ_37011; P0019D06.17-1; P0024G09.5-1; P0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69870.1	NRT1.7 nitrate transporter 1.7 chr1:26316208-26320097 FORWARD LENGTH=620	3.0e-29	48%
RefSeq	Arabidopsis thaliana	NP_564979.1	nitrate transporter 1.7 [Arabidopsis thaliana]	3.0e-29	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA65

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 132 - 629

Fln protein: S*PWLSLTVENIEGLKSVIRTLPIFSCGIANQITNAQYHTFSVLQALSMDRRIGSTGFEIPAGSFSVFSLLVLIVWLPFYDRVVVPYARRRTKNNRGITVFQRLGIGFAISSSSMLAAGLVEVKRRSATSQ*

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTGTTGAAAATATTGAGGGGCTCAAATCCGTCATCAGAACACTCCCCATATTTTCCTGCGGAATTGCCAATCAAATCACAAACGCACAGTATCACACGTTCTCCGTTTTGCAGGCCCTAAGCATGGACCGGCGGATAGGCTCCACGGGTTTCGAAATACCAGCGGGATCATTCTCGGTTTTCTCTCTGCTTGTTCTCATCGTATGGCTGCCATTTTACGACAGGGTTGTTGTGCCCTATGCCAGGCGCAGAACAAAGAATAACAGGGGTATCACCGTGTTTCAAAGACTGGGTATCGGATTCGCCATTTCATCGTCATCTATGTTGGCAGCCGGTTTAGTAGAAGTGAAGAGACGGAGTGCCACTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

GG46A6U01CQNIR___WLSLTVENIEGLKSVIRTLPIFSCGIANQITNAQYHTFSVLQALSMDRRIGSTGFEIPAGSFSVFSLLVLIVWLPFYDRVVVPYARRRTKNNRGITVFQRLGIGFAISSSSMLAAGLVEVKRRS
D5AA65_______________WRICSVEQIEGLKSIMRTLPIFSCGIANQITNAQQHTFSVLQALSMDRRLGSKGFQIPAGSFSVFSLLVLIAWLPFYERVVVPIARRITKDNRGITMFQRMGIGFSISALSMLVAGLVEVKRRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain