SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66817

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene66817
CGTCGTGACCTTGGCTGTCACTCAATTATTCATATTGAATTTTCTCAGATATCTACCGATACAGGTATTGTTCATTCATAATTTTGTCTCATATCTACTGCAATATGGTGTTGATAACTAACAACAATAATGGCAACGAGAAACAGAAAGTGGGTCTTTCCCTTGTTTGGAAAAATCCGTTTATACTTAGATTAGCACTTACTGCAGGCATTGGAGGTCTCCTCTTCGGTTATGACACAGGTGTCATATCAGGTGCCCTTTTGTATATCAGAGATGAGTTTCCCTCAGTGGAAAGAAACACATCTTTACAGGAGACCATTGTTAGTATGGCTGTTGCAGGAGCGGTTATTGGGGCTGGCTTTGGAGGTCTATATAGCGAACGGTTTGGGAGGCGAATATCGCTGCTATCAGCG

Ace file of the UniGene sp_v3.0_unigene66817

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	General substrate transporter n=1 Tax=Medicago truncatula RepID=Q2HSP6_MEDTR	-	-	5.0e-22	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Putative Na+/myo-inositol symporter	-	-	1.018e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.5e-08	-

Source	Gene names
Sma3	At1g30220; At2g35740; At2g43330; At4g16480; B1364A02.4; Ctr; F12P21.2; FCAALL.375; GSVIVT00001923001; GSVIVT00012471001; GSVIVT00028332001; INT1; INT2; INT3; INT4; Itr1; Itr2; Itr3; MtrDRAFT_AC151520g15v2; MtrDRAFT_AC152184g3v2; OJ1048_C10.5; OSIGBa0130B0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	myo-inositol transport	GO:0015798	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30220.1	ATINT2, INT2 inositol transporter 2 chr1:10632957-10635439 REVERSE LENGTH=580	7.0e-26	71%
RefSeq	Arabidopsis thaliana	NP_174313.1	putative inositol transporter 2 [Arabidopsis thaliana]	9.0e-26	71%
RefSeq	Populus trichocarpa	XP_002308797.1	predicted protein [Populus trichocarpa]	6.0e-26	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: Distance to subject end: 487 aas, your sequence is shorter than subject: 103 - 589

Fln protein: MVLITNNNNGNEKQKVGLSLVWKNPFILRLALTAGIGGLLFGYDTGVISGALLYIRDEFPSVERNTSLQETIVSMAVAGAVIGAGFGGLYSERFGRRISLLSA

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTCATATTGAATTTTCTCAGATATCTACCGATACAGGTATTGTTCATTCATAATTTTGTCTCATATCTACTGCAAT_-_ATGGTGTTGATAACTAACAACAATAATGGCAACGAGAAACAGAAAGTGGGTCTTTCCCTTGTTTGGAAAAATCCGTTTATACTTAGATTAGCACTTACTGCAGGCATTGGAGGTCTCCTCTTCGGTTATGACACAGGTGTCATATCAGGTGCCCTTTTGTATATCAGAGATGAGTTTCCCTCAGTGGAAAGAAACACATCTTTACAGGAGACCATTGTTAGTATGGCTGTTGCAGGAGCGGTTATTGGGGCTGGCTTTGGAGGTCTATATAGCGAACGGTTTGGGAGGCGAATATCGCTGCTATCAGCG

Fln Alignment:

GG46A6U01CA8IY___LSLVWKNPFILRLALTAGIGGLLFGYDTGVISGALLYIRDEFPSVERNTSLQETIVSMXXXXXXXXXXXXXLYSERFGRRISLLSA
B8LLI2_______________LSLIRQNPFVLRLALSAGLGGLLFGYDTGVISGALLYIRDDFEEVDHSTKLQETIVSMAVAGAIVGAAFGGWVNDRFGRRFALLLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain