SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66713

Length: 291 nt

UniGene Fasta

>sp_v3.0_unigene66713
CGTCGTGACCTTGGCTGTCACTCATGCGAAAGTTTAATTTAATCTCGTAGGATTATCCTAGAGGCAGGTCGGTATTCTCCAATCGGCTATCGAAATGAAGTGTTGAAATCGACTATGGAAGATGAGAGAAGCAAGAGAAGAGCCATGAAGGCCGTTGCAGAAACCGGAGTGGTCTCCATTTCTGTGGACATGAAAGAGGGAAAGATAACTGTGGTTGGAGAAGCTGATCCTGTGTGGCTCGCAACAAAGCTGAGGAAAATAGGGTTCAGAGCAAAGTTAGTAAGCGTGGGT

Ace file of the UniGene sp_v3.0_unigene66713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00403, HMA, Heavy-metal-associated domain	-	-	8.0e-08	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01490.1	Heavy metal transport/detoxification superfamily protein chr1:180401-182066 REVERSE LENGTH=177	5.0e-11	46%
RefSeq	Arabidopsis thaliana	NP_171656.1	heavy-metal-associated domain-containing protein [Arabidopsis thaliana]	6.0e-11	46%
RefSeq	Populus trichocarpa	XP_002303608.1	predicted protein [Populus trichocarpa]	2.0e-13	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQJ0

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 59 - 138

Fln protein: MEDERSKRRAMKAVAETGVVSISVDMKEGKITVVGEADPVWLATKLRKIGFRAKLVSVG

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCGAAAGTTTAATTTAATCTCGTAGGATTATCCTAGAGGCAGGTCGGTATTCTCCAATCGGCTATCGAAATGAAGTGTTGAAATCGACT_-_ATGGAAGATGAGAGAAGCAAGAGAAGAGCCATGAAGGCCGTTGCAGAAACCGGAGTGGTCTCCATTTCTGTGGACATGAAAGAGGGAAAGATAACTGTGGTTGGAGAAGCTGATCCTGTGTGGCTCGCAACAAAGCTGAGGAAAATAGGGTTCAGAGCAAAGTTAGTAAGCGTGGGT

Fln Alignment:

GG46A6U01C1KXA___VLKSTMEDERSKRRAMKAVAETGVVSISVDMKEGKITVVGEADPVWLATKLRKIGFRAKLVSVG
A9NQJ0_______________VLKSTMEDERSKRRAMKAVAGIGVDSIAVDIKEEKITVVGEVDPVWLTTKLRKMGFRAELLSVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain