SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66679

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene66679
CGTCGTGACCTTGGCTGTCACTCAATCGGTTGGCACTGCACATGATGTCCGGAGTTCTGATTTTGAGAGAAATCTGCAATCTGAAAAGAAGTGTGAAAGGCATGGTTCAGATGGATGTTCTACTGTTGACTCTTTAACAGGGTCTGACATTATAGAGGACGAAGCCAGAGTACCACCTGAGTGGACACCACCAAAACTAAGCGTTCCATTGCTGAATTTAGTAGATAACATTTTTCAGCTTAAACGAAGGGGTTGGTTGAGACGTCAAGTATTTTGGATTTCAAAGCAAATCTTGCAGGTGGTTATGGAAGATGCTTCGC

Ace file of the UniGene sp_v3.0_unigene66679

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains PF\|00787 PX (phox) domain [Arabidopsis thaliana]	-	-	4.0e-12	60%
FL-Next	tr=Sorting nexin-16; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	54%

Source	Gene names
Sma3	At2g15900; GSVIVT00036497001; LOC_Os11g06040; OsI_35199; OsJ_33047; PHYPADRAFT_127974; PHYPADRAFT_74637; PHYPADRAFT_77750; POPTRDRAFT_1087015; POPTRDRAFT_267720; RCOM_0939510;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	cell communication	GO:0007154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phox homologous domain	IPR001683	-	-
Sma3	Phox-associated domain	IPR003114	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Sorting nexin, C-terminal	IPR013937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G15900.1	" Phox-associated domain;Phox-like;Sorting nexin, C-terminal chr2:6927390-6932535 FORWARD LENGTH=994"	2.0e-22	54%
RefSeq	Arabidopsis thaliana	NP_179190.3	phox domain-containing protein [Arabidopsis thaliana]	3.0e-22	54%
RefSeq	Populus trichocarpa	XP_002330312.1	predicted protein, partial [Populus trichocarpa]	3.0e-26	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7JNK6

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 106 - 1146

Fln protein: VVTLAVTQSVGTAHDVRSSDFERNLQSEKKCERHGSDGCSTVDSLTGSDIIEDEARVPPEWTPPKLSVPLLNLVDNIFQLKRRGWLRRQVFWISKQILQVVMEDAS

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGGTTGGCACTGCACATGATGTCCGGAGTTCTGATTTTGAGAGAAATCTGCAATCTGAAAAGAAGTGTGAAAGGCATGGTTCAGATGGATGTTCTACTGTTGACTCTTTAACAGGGTCTGACATTATAGAGGACGAAGCCAGAGTACCACCTGAGTGGACACCACCAAAACTAAGCGTTCCATTGCTGAATTTAGTAGATAACATTTTTCAGCTTAAACGAAGGGGTTGGTTGAGACGTCAAGTATTTTGGATTTCAAAGCAAATCTTGCAGGTGGTTATGGAAGATGCTTCGC

Fln Alignment:

GG46A6U01EM8E4___SVGTAHDVRSSDFERNLQSEKKCERHGSDGCSTVDSLTGSDIIEDEARVPPEWTPPKLSVPLLNLVDNIFQLKRRGWLRRQVFWISKQILQVVMEDA
G7JNK6_______________SLVTDYTDESSNLAIDRQRDLSEEARISNDVPTTNSILTRDNLEDPVGVPPEWSPPNVSVPLLNLVDKIFQLKKRGWIRRQVFWMSKQILQLVMEDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain