SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66649

Length: 146 nt

UniGene Fasta

>sp_v3.0_unigene66649
CGTCGTGACCTTGGCTGTCACTCAGGAAAAGCAGACTTGAATCTTTATCGTGATGCTGGATCAGAGGTAGTTTCTGTGCTGTCAAGGAAGGGAAAATGTGAACGAGCATCTATTGATGAGGTATACCTTGACATTACTGATGCGGC

Ace file of the UniGene sp_v3.0_unigene66649

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative translesion synthesis polymerase RAD30 [Arabidopsis thaliana]	-	-	4.0e-12	85%
FL-Next	tr=Translesion synthesis DNA polymerase eta splice variant; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%

Source	Gene names
Sma3	At5g44740; B1131G08.4-1; B1131G08.4-2; GSVIVT00030106001; Os01g0757800; OsI_03798; OsJ_03511; PHYPADRAFT_134789; POLH; RCOM_1196260; T19K24.15;

Source	GOs	Term	Type	Identity
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	DNA polymerase eta	IPR017061	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44740.2	POLH Y-family DNA polymerase H chr5:18047903-18051779 REVERSE LENGTH=672	8.0e-17	85%
RefSeq	Arabidopsis thaliana	NP_568638.2	DNA polymerase eta subunit [Arabidopsis thaliana]	1.0e-16	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A4ZYA7

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 48 - 350

Fln protein: RRDLGCHSGKADLNLYRDAGSEVVSVLSRKGKCERASIDEVYLDITDA

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAAAGCAGACTTGAATCTTTATCGTGATGCTGGATCAGAGGTAGTTTCTGTGCTGTCAAGGAAGGGAAAATGTGAACGAGCATCTATTGATGAGGTATACCTTGACATTACTGATGCGGC

Fln Alignment:

GG46A6U01C9H4U___GKADLNLYRDAGSEVVSVLSRKGKCERASIDEVYLDITDA
A4ZYA7_______________GKADLNLYRSAGSEVVSILAKSGKCERASIDEVYLDLTDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain