SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66541

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene66541
CGTCGTGACCTTGGCTGTCACTCATCATTGAAATTCTACCAAAAGTTCAACGTTCAAAACGAGTGATATTCTTGAGCTTTTGGGCAGAAGTGCACTATAATTCCATCTATCCTGAAGGGGGTAAGTTTAGTGGAGAATGAAGATTTGTTGATGTGGTTATCTCTATGCTAGCTTCCAAATAGCACTATTCTGTATTGGAAGTTCTGAA

Ace file of the UniGene sp_v3.0_unigene66541

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OTU-like cysteine protease family protein [Arabidopsis thaliana] ref\|NP_001119168.1\| OTU-like cysteine protease family protein [Arabidopsis thaliana] gb\|AAM64524.1\| unknown [Arabidopsis thaliana] dbj\|BAD95211.1\| hypothetical protein [Arabidopsis thaliana]	-	-	7.0e-07	80%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	87%
Sma3	Cysteine-type peptidase	-	-	1.763e-08	-

Source	Gene names
Sma3	At5g04250; F21E1_170; GSVIVT00018158001; GSVIVT00023222001; GSVIVT00024580001; LOC_Os03g64219; OJ1202_E07.21-1; Os03g0859800; OsI_09471; OsI_14428; OsJ_08894; OsJ_13452; P0474F11.2-1; PHYPADRAFT_120080; POPTRDRAFT_1092489; POPTRDRAFT_419627;

Source	GOs	Term	Type	e value	Identity
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315318.1	predicted protein [Populus trichocarpa]	2.0e-12	81%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: I1LCY7

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 18 aas, your sequence is shorter than subject: 46 - 369

Fln protein: S*PWLSLIIEILPKVQRSKRVIFLSFWAEVHYNSIYPEGGKFSGE*

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCATTGAAATTCTACCAAAAGTTCAACGTTCAAAACGAGTGATATTCTTGAGCTTTTGGGCAGAAGTGCACTATAATTCCATCTATCCTGAAGGGGGTAAGTTTAGTGGAGAATGA___AGATTTGTTGATGTGGTTATCTCTATGCTAGCTTCCAAATAGCACTATTCTGTATTGGAAGTTCTGAA

Fln Alignment:

GG46A6U01CAQXS___IEILPKVQRSKRVIFLSFWAEVHYNSIYPEGG
I1LCY7_______________IEILPQIQKSERVIFLSFWAEVHYNSIYPEGG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain