SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66509

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene66509
CGTCGTGACCTTGGCTGTCACTCAGAGGTTTTCCAACTCTATTGCCAGATGATGCAGCAGCCCAATATCCAGCCAGACAAGTTCACTTTTCCTTTGGTTATCAAGGCATGTGGTACCCTATTAATGCTGCAAGAGGGTATGGAGATTCATGGTTATATAATCAGGGCTGGGTTTGAAACAGATGTCTTTGTGGGAAATTCCCTACTGAGTTTGTACACTAAGTGTGGGAACACAGAAGTTGCACGCC

Ace file of the UniGene sp_v3.0_unigene66509

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9C6T2.1\|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920 gb\|AAG50713.1\|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana] gb\|AEE31416.1\| pent	-	-	2.0e-12	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G31920.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr1:11461864-11463684 REVERSE LENGTH=606	1.0e-16	45%
RefSeq	Arabidopsis thaliana	NP_174474.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-16	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 519 aas, your sequence is shorter than subject: 82 - 795

Fln protein: RRDLGCHSEVFQLYCQMMQQPNIQPDKFTFPLVIKACGTLLMLQEGMEIHGYIIRAGFETDVFVGNSLLSLYTKCGNTEVAR

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGGTTTTCCAACTCTATTGCCAGATGATGCAGCAGCCCAATATCCAGCCAGACAAGTTCACTTTTCCTTTGGTTATCAAGGCATGTGGTACCCTATTAATGCTGCAAGAGGGTATGGAGATTCATGGTTATATAATCAGGGCTGGGTTTGAAACAGATGTCTTTGTGGGAAATTCCCTACTGAGTTTGTACACTAAGTGTGGGAACACAGAAGTTGCACGCC

Fln Alignment:

GG46A6U01A2HIP___GCHSEVFQLYCQMMQQPNIQPDKFTFPLVIKACGTLLMLQEGMEIHGYIIRAGFETDVFVGNSLLSLYTKCGNTEVAR
B8LQA8_______________GFWNKALRLYYQM-QRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain