SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66479

Length: 344 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene66479
GGAAAAGCATTAGACCGAGTAAAGAAGAGAATTGCATCAGCTATGGGGACTCCAAAAGTGCTGAATGTAAAATGGGAAGATGTTGGTGGGCTTGCAGATGTGAAGTCAATTCTTGATACAGTATAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCATCTGCCTTGCGTCAACATTCTGGTGTTCTTTATGGGCCTCCTGGCACAAGCAAGTGTGAAGAAACATTATCCATGATGAGAAGAAATAAAGAAGCACTGCTTAATATTATTGAAGTTTTTATCCATGACCCACTTTACAAATGGGCTCCTTCACCTCTTAAAGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene66479 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxin 6 [Helianthus annuus]	-	-	8.0e-22	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Source	Gene names
Sma3	ATM; At1g03000; At3g48190; F10O3.18; GSVIVT00016088001; GSVIVT00023563001; H0313F03.5; H0818E11.8; MtrDRAFT_AC157502g14v2; OSJNBa0093O08.9; Os01g0106700; Os04g0617600; OsI_00057; OsI_17423; OsJ_00056; OsJ_16174; PHYPADRAFT_128012; POPTRDRAFT_245912; POPTR

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	fatty acid beta-oxidation	GO:0006635	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	protein import into peroxisome matrix	GO:0016558	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Ataxia-Telangiectasia Mutated	IPR015519	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03000.1	PEX6 peroxin 6 chr1:688057-692453 REVERSE LENGTH=941	4.0e-26	66%
RefSeq	Arabidopsis thaliana	NP_171799.2	peroxin 6 [Arabidopsis thaliana]	5.0e-26	66%
RefSeq	Populus trichocarpa	XP_002321026.1	predicted protein, partial [Populus trichocarpa]	4.0e-27	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNH8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 163 aas, your sequence is shorter than subject: 109 - 336

Fln protein: GKALDRVKKRIASAMGTPKVLNVKWEDVGGLADVKSILDTV*LPLVHKELFSSALRQHSGVLYGPPGTSKCEETLSMMRRNKEALLNIIEVFIHDPLYKWAPSPLKDE*

Protein Length: 110

Fln nts: GGAAAAGCATTAGACCGAGTAAAGAAGAGAATTGCATCAGCTATGGGGACTCCAAAAGTGCTGAATGTAAAATGGGAAGATGTTGGTGGGCTTGCAGATGTGAAGTCAATTCTTGATACAGTATAGCTGCCTCTTGTGCACAAAGAGCTCTTTTCATCTGCCTTGCGTCAACATTCTGGTGTTCTTTATGGGCCTCCTGGCACAAGCAAGTGTGAAGAAACATTATCCATGATGAGAAGAAATAAAGAAGCACTGCTTAATATTATTGAAGTTTTTATCCATGACCCACTTTACAAATGGGCTCCTTCACCTCTTAAAGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

GG46A6U01A7EL2___KALDRVKKRIASAMGTPKV------------------LNVKWEDVGGLADVKSIL-DTV*LPLVHKELFSSA--LRQHSGVL-YGPPGTSKCEETLSMMRRNKEALLNIIEVFIHDPLYKW
B8LNH8_______________KAADR-KKEIAKKLGRPLVKTNQYEDVIACDVVNPDDIDVAFESIGGLDEIKQALHELVILPLQRPGLFSHGRLLGPQKGVLLYGPPGTGK---TLLAKAIAKESGAVFINVRIANLMSKW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain