SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66477

Length: 425 nt

UniGene Fasta

>sp_v3.0_unigene66477
CGTCGTGACCTTGGCTGTCACTCAGGTTTGAATCCGATGACATTTCCCCCGTCCAGCAATTTGGACCCAAATATCTACGGTCCACAGAAGAGTTCAATCACCGAGCAACACATACAAAAGTTCCTCGAGGGCCTTTCCGTGCAGCAGGCTGTTGCGTCAAAGAGGGTGTTTATTCTGGACTACTATGATGCATATATGCTGTATGCCGAACGCATCAATAAGCTATCGGAGGGTAGTAAAACATATGGCAGTCGCACACTTTTCTTCCTCACAAACGAGGGAGTCCTGAAGCCCGTGGCCATTGAATTGTGTTTGCCTCCCACCGCTGAACAGGAATTAGGTGTTAGAAACGTGTACACTCCTGCTGAGGAGGGGACAGAAGAAGGAGCGTTATGGTTGCTGGAAAAAGCTCATGCTCGTGTCAA

Ace file of the UniGene sp_v3.0_unigene66477

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	74%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ACRE44; At1g17420; At1g55020; At1g72520; F14C21.3; F14C21.54; F28G4.10; F28P22.29; GSVIVT00004618001; GSVIVT00009797001; GSVIVT00013069001; GSVIVT00019960001; GSVIVT00022800001; GSVIVT00022801001; GSVIVT00024664001; LOC_Os03g08220; LOC_Os03g49260; LOC_Os0

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G17420.1	LOX3 lipoxygenase 3 chr1:5977512-5981384 FORWARD LENGTH=919	8.0e-34	49%
RefSeq	Arabidopsis thaliana	NP_564021.1	lipoxygenase 3 [Arabidopsis thaliana]	1.0e-33	49%
RefSeq	Populus trichocarpa	XP_002328567.1	predicted protein [Populus trichocarpa]	2.0e-34	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Distance to subject end: 357 aas, your sequence is shorter than subject: 141 - 930

Fln protein: RRDLGCHSGLNPMTFPPSSNLDPNIYGPQKSSITEQHIQKFLEGLSVQQAVASKRVFILDYYDAYMLYAERINKLSEGSKTYGSRTLFFLTNEGVLKPVAIELCLPPTAEQELGVRNVYTPAEEGTEEGALWLLEKAHARV

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGAATCCGATGACATTTCCCCCGTCCAGCAATTTGGACCCAAATATCTACGGTCCACAGAAGAGTTCAATCACCGAGCAACACATACAAAAGTTCCTCGAGGGCCTTTCCGTGCAGCAGGCTGTTGCGTCAAAGAGGGTGTTTATTCTGGACTACTATGATGCATATATGCTGTATGCCGAACGCATCAATAAGCTATCGGAGGGTAGTAAAACATATGGCAGTCGCACACTTTTCTTCCTCACAAACGAGGGAGTCCTGAAGCCCGTGGCCATTGAATTGTGTTTGCCTCCCACCGCTGAACAGGAATTAGGTGTTAGAAACGTGTACACTCCTGCTGAGGAGGGGACAGAAGAAGGAGCGTTATGGTTGCTGGAAAAAGCTCATGCTCGTGTCAA

Fln Alignment:

GG46A6U01BVW26___SGLNPM------TFPPSSNLDPNIYGPQKSSITEQHIQKFLEGLSVQQAVASKRVFILDYYDAYMLYAERINKL-SEGSKTYGSRTLFFLTNEGVLKPVAIELCLPPTAEQELGVRNVYTPAEEGTEEGALWLLEKAHARV
B8LLK5_______________AGVNPLVIRCLETFPPSSSLDPNLYGPQKSTITEQHIKKFLDGLSLSQAVGSKRLFILDYYDPYMLYAERINKLSSDANKTYASRTLFFLTDEGELKPVAIELCLPPTADHK-AVRSVYTPGEEGTEEGALWRLARAHARV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain