SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66345

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene66345
CGTCGTGACCTTGGCTGTCACTCAATGTCACATGACTATGGCAAACCCGCCTCATACAACCTCAATTCTGAGATAATGGGTGTGTTACAGGATAATACCAAAACAGCATGGGAGCGAAGACAGTGGATGAGAAATCGCACCATGCAGCTGGAAGAACAGAAAGTTAACTATCAAGCTCAGGCATTTGAACTGGAGAAACAGCGCTTTAAATGGCAGAAATTCAGTAGC

Ace file of the UniGene sp_v3.0_unigene66345

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Putative uncharacterized protein SHOOT2	-	-	7.797e-06	-

Source	Gene names
Sma3	GSVIVT00021711001; MtrDRAFT_AC139525g26v2; POPTRDRAFT_781186; RCOM_0840720; SHOOT2;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002326236.1	predicted protein [Populus trichocarpa]	8.0e-21	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM63

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 68 - 137

Fln protein: MSHDYGKPASYNLNSEIMGVLQDNTKTAWERRQWMRNRTMQLEEQKVNYQAQAFELEKQRFKWQKFSS

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCA_-_ATGTCACATGACTATGGCAAACCCGCCTCATACAACCTCAATTCTGAGATAATGGGTGTGTTACAGGATAATACCAAAACAGCATGGGAGCGAAGACAGTGGATGAGAAATCGCACCATGCAGCTGGAAGAACAGAAAGTTAACTATCAAGCTCAGGCATTTGAACTGGAGAAACAGCGCTTTAAATGGCAGAAATTCAGTAGC

Fln Alignment:

GG46A6U01C1NAQ___MSHDYGKP-ASYNLNSEIMGVLQDNTKTAWERRQWMRNRTMQLEEQKVNYQAQAFELEKQRFKWQKFSS
B8LM63_______________MSNECAKPNAPDNQNADMMGLVQDTAKIPWEQREWTRNRTLQLQEQKVSLQAQAFELEKRRFKWQKICS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain