SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66319

Length: 227 nt

UniGene Fasta

>sp_v3.0_unigene66319
CGTCGTGACCTTGGCTGTCACTCAAAGAAATGTGGTCTCATGGACTGTAATTATTGCAGGATATGGCAAACACGGGTATGGAAAAGAAGCTGTCCAACTATTCGAGAGAATGCAAGAGATGGGCATAAAGGTGGACCATATCACTTTGCTGGCTGTTCTATTTGCTTGCAGCCATGCAGGCCTGGTGGATGAAGGCTGGGAATACTTTCATTCCATGAGTAGGGACC

Ace file of the UniGene sp_v3.0_unigene66319

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SN39.1\|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18750, chloroplastic; Flags: Precursor emb\|CAB37460.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	2.0e-18	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	2.921e-12	-

Source	Gene names
Sma3	At1g25360; At3g16610; At3g23330; F4F7.25; GSVIVT00006973001; GSVIVT00017560001; GSVIVT00017938001; GSVIVT00020291001; GSVIVT00022254001; GSVIVT00025485001; H0723C07.12; MGL6.8; MLM24.6; MtrDRAFT_AC149131g10v2; OJ1199_H01.113; OSJNBa0070M12.7; OSJNBa0074P1

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18750.1	DOT4 Pentatricopeptide repeat (PPR) superfamily protein chr4:10304850-10307465 FORWARD LENGTH=871	2.0e-23	52%
RefSeq	Arabidopsis thaliana	NP_193610.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-23	52%
RefSeq	Populus trichocarpa	XP_002318314.1	predicted protein [Populus trichocarpa]	2.0e-22	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 242 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 75 - 312

Fln protein: VVTLAVTQRNVVSWTVIIAGYGKHGYGKEAVQLFERMQEMGIKVDHITLLAVLFACSHAGLVDEGWEYFHSMSRD

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGAAATGTGGTCTCATGGACTGTAATTATTGCAGGATATGGCAAACACGGGTATGGAAAAGAAGCTGTCCAACTATTCGAGAGAATGCAAGAGATGGGCATAAAGGTGGACCATATCACTTTGCTGGCTGTTCTATTTGCTTGCAGCCATGCAGGCCTGGTGGATGAAGGCTGGGAATACTTTCATTCCATGAGTAGGGACC

Fln Alignment:

GG46A6U01DXCCA___VTQRNVVSWTVIIAGYGKHGYGKEAVQLFERMQEMGIKVDHITLLAVLFACSHAGLVDEGWEYFHSMSRD
D5ADG9_______________MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain