SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66095

Length: 123 nt

UniGene Fasta

>sp_v3.0_unigene66095
AGTAGACCACCTATACCTGCATGATTGATCTTTTTGGCCGTGCAGGGCTCTTAGATGAGGTGGAGCACTTGATTAACAACATGCCGTTTGAACCTGATGCTTTTATCTGGGGGATCTTGTGCT

Ace file of the UniGene sp_v3.0_unigene66095

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	9.0e-08	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	OSJNBa0006B20.5; OsI_15981; OsJ_14890;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	8.0e-12	66%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-11	66%
RefSeq	Populus trichocarpa	XP_002318526.1	predicted protein [Populus trichocarpa]	1.0e-11	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 196 aas, your sequence is shorter than subject: 40 - 514

Fln protein: *TTYTCMIDLFGRAGLLDEVEHLINNMPFEPDAFIWGILC

Protein Length: 41

Fln nts: AGTAGACCACCTATACCTGCATGATTGATCTTTTTGGCCGTGCAGGGCTCTTAGATGAGGTGGAGCACTTGATTAACAACATGCCGTTTGAACCTGATGCTTTTATCTGGGGGATCTTGTGCT

Fln Alignment:

GG46A6U01ATEL3___YTCMIDLFGRAGLLDEVEHLINNMPFEPDAFIWGIL
D5AD86_______________YTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain