SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66009

Length: 404 nt

UniGene Fasta

>sp_v3.0_unigene66009
CGTCGTGACCTTGGCTGTCACTCATGTTTCTGGGTGTTGTGAGCTAGAAAGCTACCAAGTATAGAAACATTGGTATCTTTGGAGCAGTTGCGGGCATCTTGCTGTGTAAACCTGAGGAGCATATGGGGGTTAGCCCAGGCCACAAATCTTAGGAAGCTAAATGTTCGCAAGTGCTTTGACTTGGAAGAAGTGGAAGGTATTGAACATTGTACGTGGTTAGAGATGCTCGATATCTCTGGATGTCACAAATTGGTGTGTCCCGTGTGGGAGTAGCAGCCGATAAGCTGTGCCGTGATTATTTTGAGAAGGCCCATCACTTCTGAATATATAAATCATTATTTTTATGGTTTATTATTTTAATCGTTGAAATAACCATAATTACGCCGTAAGGCGTTCTAACTTTT

Ace file of the UniGene sp_v3.0_unigene66009

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	2.0e-25	82%
FL-Next	tr=TIR/P-loop/LRR; Pinus taeda (Loblolly pine).	-	-	0.0	82%
Sma3	TIR/P-loop/LRR	-	-	4.386e-06	-

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8L8J0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 91 - 348

Fln protein: RRDLGCHSCFWVL*ARKLPSIETLVSLEQLRASCCVNLRSIWGLAQATNLRKLNVRKCFDLEEVEGIEHCTWLEMLDISGCHKLVCPVWE*

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTCTGGGTGTTGTGAGCTAGAAAGCTACCAAGTATAGAAACATTGGTATCTTTGGAGCAGTTGCGGGCATCTTGCTGTGTAAACCTGAGGAGCATATGGGGGTTAGCCCAGGCCACAAATCTTAGGAAGCTAAATGTTCGCAAGTGCTTTGACTTGGAAGAAGTGGAAGGTATTGAACATTGTACGTGGTTAGAGATGCTCGATATCTCTGGATGTCACAAATTGGTGTGTCCCGTGTGGGAGTAG___CAGCCGATAAGCTGTGCCGTGATTATTTTGAGAAGGCCCATCACTTCTGAATATATAAATCATTATTTTTATGGTTTATTATTTTAATCGTTGAAATAACCATAATTACGCCGTAAGGCGTTCTAACTTTT

Fln Alignment:

GG46A6U01BKA1N___KLPSIETLVSLEQLRASCCVNLRSIWGLAQATNLRKLNVRKCFDLEEVEGIEHCTWLEMLDISGCHKL
Q8L8J0_______________ELPSLETLVSLEQLWANGCVNLRSIWGLAQATNLRNLSVRKCFALEEVEGIEHCTWLESLDVSPCHEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain