SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene66006

Length: 388 nt

UniGene Fasta

>sp_v3.0_unigene66006
CGTCGTGACCTTGGCTGTCACTCAACCTGATGACTTGGGGAGGCTCAACTCTTTAAGAATGTTAAGGGTATCTGCATGTGTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTAGAATATCTTGACATTTCCCTTTGCGAGTGCTTAAAAGAACTTCCGGAAGAAATAGGACAGTTGAGGAAACTTGAAGAGCTTAACATGACAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTCGGAGGGATGACATCTCTGAAGCATGTTACCTGCGATGAGAAGATTGGGCAGCAATGGAATCGTGTCAAGAGCTCTTTCATGATGAAGGTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTTCGC

Ace file of the UniGene sp_v3.0_unigene66006

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Nbs-lrr resistance protein	-	-	4.378e-06	-

Source	Gene names
Sma3	GSVIVT00014747001; LOC_Os12g39620; LRR1; Os12g0586000; OsI_38915; OsJ_36681; POPTRDRAFT_710696; POPTRDRAFT_826770; RCOM_1591970; RGC-CC_1; VITISV_006255;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33300.1	ADR1-L1 ADR1-like 1 chr4:16051162-16054005 REVERSE LENGTH=816	4.0e-24	45%
RefSeq	Arabidopsis thaliana	NP_195056.2	putative disease resistance protein ADR1-like 1 [Arabidopsis thaliana]	6.0e-24	45%
RefSeq	Populus trichocarpa	XP_002327103.1	nbs-lrr resistance protein [Populus trichocarpa]	2.0e-26	50%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS2

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 129 - 244

Fln protein: VVTLAVTQPDDLGRLNSLRMLRVSACVGLKELPASIGKLGKLEYLDISLCECLKELPEEIGQLRKLEELNMTECSRLRKLPKSVGGMTSLKHVTCDEKIGQQWNRVKSSFMMKVIVEVAEAHFSLDWLR

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCTGATGACTTGGGGAGGCTCAACTCTTTAAGAATGTTAAGGGTATCTGCATGTGTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTAGAATATCTTGACATTTCCCTTTGCGAGTGCTTAAAAGAACTTCCGGAAGAAATAGGACAGTTGAGGAAACTTGAAGAGCTTAACATGACAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTCGGAGGGATGACATCTCTGAAGCATGTTACCTGCGATGAGAAGATTGGGCAGCAATGGAATCGTGTCAAGAGCTCTTTCATGATGAAGGTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTTCGC

Fln Alignment:

GG46A6U01BOL8O___PDDLGRLNSLRMLRVSACVGLKELPASIGKLGKLEYLDISLCECLKELPEEIGQLRKLEELNMTECSRLRKLPKSVGGMTSLKHVTCDEKIGQQWNRVK-SSFMMKVIVEVAEAHFSLDWL
A9NKS2_______________PDDLGRLSSLRMLRVSACLGLKELPTSIGKLGKLEYLDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLRSLKHVICDEKIGQQWSRVKSSSAIMDLRIEVVEAHFSLDWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain