SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65971

Length: 414 nt

UniGene Fasta

>sp_v3.0_unigene65971
CGTCGTGACCTTGGCTGTCACTCAATTCTCGTTTATGTCGTTAAGCTGGTCTATTATGCATTCATTCGCGTTCAGGGCCGAACACAGTTTAGCCGCGCAGCGGGTAACGCGACTGTGACTGCACAGGAGCAGAACAGGTCCGCGGTAGCGGTCCCGGGACTCGATCAGGCGACCTTGGATTTGTATCCGAAGTTTGAGTATTCTGAAGAGGAGAAGAAGAAGAATGGGGGAGAACATCAATCGGACTGCTCGATTTGCCTCGGCGATTACAAGGACTCCGACCTGCTTCGCATGCTGCCGGACTGCGGTCACACCTTCCACGTCACCTGCATTGACGCGTGGATGCAGTTGCATGCCACGTGTCCGATGTGTAGGACTTCGCCGCTGCCATCCCCGCTGTCGACCCCTTTTCGC

Ace file of the UniGene sp_v3.0_unigene65971

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RING zinc finger protein [Arabidopsis thaliana]	-	-	1.0e-18	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	GSVIVT00026913001; LOC_Os03g57410; OJ1714_H10.111; OSJNBb0024J04.16; Os03g0788100; OsI_13817; OsI_24968; OsJ_12875; OsJ_23156; P0455F03.42; PHYPADRAFT_105593; POPTRDRAFT_256214; POPTRDRAFT_416414; POPTRDRAFT_563561; POPTRDRAFT_567881; POPTRDRAFT_567882; P

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Proteinase inhibitor I1, Kazal	IPR002350	-	-
Sma3		IPR010847	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316478.1	predicted protein [Populus trichocarpa]	1.0e-30	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSZ4

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 138 - 162

Fln protein: RRDLGCHSILVYVVKLVYYAFIRVQGRTQFSRAAGNATVTAQEQNRSAVAVPGLDQATLDLYPKFEYSEEEKKKNGGEHQSDCSICLGDYKDSDLLRMLPDCGHTFHVTCIDAWMQLHATCPMCRTSPLPSPLSTPFR

Protein Length: 139

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCGTTTATGTCGTTAAGCTGGTCTATTATGCATTCATTCGCGTTCAGGGCCGAACACAGTTTAGCCGCGCAGCGGGTAACGCGACTGTGACTGCACAGGAGCAGAACAGGTCCGCGGTAGCGGTCCCGGGACTCGATCAGGCGACCTTGGATTTGTATCCGAAGTTTGAGTATTCTGAAGAGGAGAAGAAGAAGAATGGGGGAGAACATCAATCGGACTGCTCGATTTGCCTCGGCGATTACAAGGACTCCGACCTGCTTCGCATGCTGCCGGACTGCGGTCACACCTTCCACGTCACCTGCATTGACGCGTGGATGCAGTTGCATGCCACGTGTCCGATGTGTAGGACTTCGCCGCTGCCATCCCCGCTGTCGACCCCTTTTCGC

Fln Alignment:

GG46A6U01BDQAJ___ILVYVVKLVYYAFIRVQGRTQFSRAAGNATVTAQEQNRSAVAVPGLDQATLDLYPKFEYSEEEKKKNGGEHQSDCSICLGDYKDSDLLRMLPDCGHTFHVTCIDAWMQLHATCPMCR
A9NSZ4_______________ILLLFMICVYRGQFNISWRRLFSFARGDPL------NLRNV---GLDARVVESLPVFEYKAQSFKE-----ALECAICLSEFEDNEKARLLPNCKHSFHVDCIDMWFRSHSTCPICR

SSRs (tot: 1)

Start position	End position	Sequence	Length
212	224	AGA AGA AGA AGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain