SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65963

Length: 133 nt

UniGene Fasta

>sp_v3.0_unigene65963
TAAGTGGAGATAGAGAAGTGCAACGCACTATGCTTCGAGTTACTTTTGAATCAGCTTGATGGATTTAGCAGTGATGAACGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATTTTAGATCCAGCTTTAA

Ace file of the UniGene sp_v3.0_unigene65963

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S protease regulatory subunit 6a, putative n=2 Tax=Magnoliophyta RepID=B9RFB5_RICCO	-	-	9.0e-10	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At1g09100; At3g05530; At3g05530/F22F7.1; BrTBP; CHLREDRAFT_188404; F22F7.1; GSVIVT00019753001; GSVIVT00022719001; LOC_Os02g56000; MICPUCDRAFT_35637; MICPUN_107027; OSJNBa0014B15.23; OSTLU_32343; Os02g0803700; Os06g0173100; OsI_09330; OsI_21861; OsJ_08763;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G05530.1	RPT5A, ATS6A.2 regulatory particle triple-A ATPase 5A chr3:1603540-1605993 FORWARD LENGTH=424	2.0e-12	100%
RefSeq	Arabidopsis thaliana	NP_187204.1	regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]	2.0e-12	100%
RefSeq	Populus trichocarpa	XP_002319515.1	predicted protein [Populus trichocarpa]	5.0e-12	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX40

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 97 aas, your sequence is shorter than subject: 44 - 424

Fln protein: *VEIEKCNALCFELLLNQLDGFSSDERIKVIAATNRADILDPAL

Protein Length: 45

Fln nts: TAAGTGGAGATAGAGAAGTGCAACGCACTATGCTTCGAGTTACTTTTGAATCAGCTTGATGGATTTAGCAGTGATGAACGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATTTTAGATCCAGCTTTAA

Fln Alignment:

GFXCM5X02GC4UV___LLNQLDGFSSDERIKVIAATNRADILDPAL
A9NX40_______________LLNQLDGFSSDDRIKVIAATNRADILDPAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain