SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65953

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene65953
ACCAATTCAGGGTGCTATCGAAAGCTTGCCTCCAATGCTGGAACATTTCCTATGTTCTTGTTTTCTCAACAACAGCACAAGGTAGACACTTTTCAGAAAATGCATTCATGCTTTAGATGCAAAGTCAGTTATAGTCTTTATGAACCATAATACACAGCTTAAGGACACTGTCTTCAAGCTGGAGGCAC

Ace file of the UniGene sp_v3.0_unigene65953

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RC60_RICCO	-	-	1.0e-10	56%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 47, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12770.1	ISE1, EMB1586 P-loop containing nucleoside triphosphate hydrolases superfamily protein chr1:4351888-4353543 FORWARD LENGTH=551	7.0e-15	54%
RefSeq	Arabidopsis thaliana	NP_172737.2	DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana]	8.0e-15	54%
RefSeq	Populus trichocarpa	XP_002303572.1	predicted protein [Populus trichocarpa]	2.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W4E1

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 62 - 551

Fln protein: PIQGAIESLPPMLEHFLCSCFLNNSTR*TLFRKCIHALDAKSVIVFMNHNTQLKDTVFKLEA

Protein Length: 63

Fln nts: ACCAATTCAGGGTGCTATCGAAAGCTTGCCTCCAATGCTGGAACATTTCCTATGTTCTTGTTTTCTCAACAACAGCACAAGGTAGACACTTTTCAGAAAATGCATTCATGCTTTAGATGCAAAGTCAGTTATAGTCTTTATGAACCATAATACACAGCTTAAGGACACTGTCTTCAAGCTGGAGGCAC

Fln Alignment:

GFXCM5X02F7IFX___IQGAIESLPPMLEHFLCSCFLNNSTR*TLFRKCIHALDAKSVIVFMNHNTQLKDTVFKLEA
Q8W4E1_______________IQTTIQSLPPALKHYYC--ISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain