SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65900

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene65900
CACGAGGTATTGACCTTGCTATTAACTTGAATGTAGAGAGGATATTCTAACTCAAGTTAGGTGCTTAGGAAGGAGAGTATGTACTCAATGTGGTAAGAATTTTAATGTTGCAAGCATTGACGTGAAAGGTAATGGAGGGTCCAGAATTCACATGCCACCTGTTTTGCCACCAT

Ace file of the UniGene sp_v3.0_unigene65900

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] pir\|\|T02575 adenylate kinase homolog T16B24.9 - Arabidopsis thaliana gb\|AAO22704.1\| putative adenylate kinase [Arabidopsis thaliana] gb\|AAO42392.1\| putative adenylate	-	-	3.0e-08	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	H0624F09.8; LOC_Os03g03820; OSJNBa0043A12.38; Os03g0130400; Os04g0671100; OsI_09849; OsI_17869; PHYPADRAFT_145834;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phosphotransferase activity, phosphate group as acceptor	GO:0016776	Molecular Function	-
Sma3	nucleotide kinase activity	GO:0019201	Molecular Function	-
Sma3	nucleobase-containing compound kinase activity	GO:0019205	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Adenylate kinase	IPR000850	-	0.0	-
Sma3	Adenylate kinase, subfamily	IPR006259	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39270.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr2:16399983-16401408 FORWARD LENGTH=295	1.0e-12	54%
RefSeq	Arabidopsis thaliana	NP_850314.1	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	2.0e-12	54%
RefSeq	Populus trichocarpa	XP_002316334.1	predicted protein [Populus trichocarpa]	6.0e-11	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAS0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 81 aas, your sequence is shorter than subject: 57 - 299

Fln protein: TRY*PCY*LECREDILTQVRCLGRRVCTQCGKNFNVASIDVKGNGGSRIHMPPVLPP

Protein Length: 58

Fln nts: CACGAGGTATTGACCTTGCTATTAACTTGAATGTAGAGAGGATATTCTAACTCAAGTTAGGTGCTTAGGAAGGAGAGTATGTACTCAATGTGGTAAGAATTTTAATGTTGCAAGCATTGACGTGAAAGGTAATGGAGGGTCCAGAATTCACATGCCACCTGTTTTGCCACCAT

Fln Alignment:

GFXCM5X02GWO0R___LECREDILTQVRCLGRRVCTQCGKNFNVASIDVKG-NGGSRIHMPPVLPP
D5AAS0_______________LKCREDILIK-RCLGRRVCTQCGKNFNVASIDVKGTNGGSRIHMPPVLPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain