SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65888

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene65888
GTGGAGGGTGGGGAGCTTATGGAGGAGGTGCATTCTTCTGGGAAGGATCCCACTAAGGTGGACCGAAGTGGCGCATACATAGTTAGACAGGCTGCCAAGAGCATTGTTGCAGCTGGACTTGCAAGGAGATGCCTTGTGCAGGTGTCTTATGCCATCGGAGTACCGGAGCCTCTGTCTGTCTTTGTTGATTCGTATGGTACAGGGANCATTCCA

Ace file of the UniGene sp_v3.0_unigene65888

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-adenosylmethionine synthase 2 (Fragment) n=3 Tax=core eudicotyledons RepID=METK2_PETCR	-	-	4.0e-24	94%
FL-Next	sp=S-adenosylmethionine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	S-adenosylmethionine synthetase	-	-	3.34e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Methionine adenosyltransferase.	EC:2.5.1.6	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AMS1; AT4G01850; AdoMet1; AdoMet3; AdoMet4; AdoMet5; AdoMet6; AdoMet_e2; At2g36880; At3g17390; CC2188; CHLRE_182408; CHRSAMS; GSVIVT00022173001; LOC_Os01g18860; MAT; MATX; METK; METK-1; METK-2; METK1; METK2; METK3; METK4; METK5; METM; MGD8.23; MICPUCDRAFT

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	methionine adenosyltransferase activity	GO:0004478	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	cobalt ion binding	GO:0050897	Molecular Function	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	S-adenosylmethionine synthetase	IPR002133	-	0.0	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36880.1	MAT3 methionine adenosyltransferase 3 chr2:15479721-15480893 REVERSE LENGTH=390	3.0e-30	91%
RefSeq	Arabidopsis thaliana	NP_001118458.1	S-adenosylmethionine synthase 3 [Arabidopsis thaliana]	4.0e-30	91%
RefSeq	Populus trichocarpa	XP_002319463.1	s-adenosylmethionine synthetase 2 [Populus trichocarpa]	5.0e-31	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNX2

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 71 - 393

Fln protein: VEGGELMEEVHSSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGNIP

Protein Length: 72

Fln nts: GTGGAGGGTGGGGAGCTTATGGAGGAGGTGCATTCTTCTGGGAAGGATCCCACTAAGGTGGACCGAAGTGGCGCATACATAGTTAGACAGGCTGCCAAGAGCATTGTTGCAGCTGGACTTGCAAGGAGATGCCTTGTGCAGGTGTCTTATGCCATCGGAGTACCGGAGCCTCTGTCTGTCTTTGTTGATTCGTATGGTACAGGGAaCATTCCA

Fln Alignment:

GFXCM5X02JFGH9___SGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGNIP
B8LNX2_______________SGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain