UniGene Name: sp_v3.0_unigene65869
Length: 172 nt
UniGene Fasta |
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>sp_v3.0_unigene65869
C |
Ace file of the UniGene sp_v3.0_unigene65869 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Ubiquitin carrier protein n=3 Tax=Poaceae RepID=Q6YUS2_ORYSJ | - | - | 3.0e-19 | 92% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 100% |
Sma3 | Ubiquitin carrier protein | - | - | 6.127e-35 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases). | EC:6.3.2.- | - | 9.957e-33 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Tryptophan metabolism | 00380 | 9.957e-33 | % | |
Sma3 | Biosynthesis of siderophore group nonribosomal peptides | 01053 | 9.957e-33 | % | |
Sma3 | Ubiquitin--protein ligase. | EC:6.3.2.19 | - | 5.182e-12 | - |
Source | Gene names |
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Sma3 | AT5G41700; AT5G53300; At1g64230; At2g16740; At3g08690; At3g08700; At4g27960; At5g41700; At5g53300; At5g56150; B0811B10.8; B1043F11.37; CHLREDRAFT_152525; Elr; F17O14.16; F17O14.17; F22C12.2; GSVIVT00002469001; GSVIVT00006484001; GSVIVT00023383001; GSVIVT0 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | ubiquitin-protein ligase activity | GO:0004842 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | small conjugating protein ligase activity | GO:0019787 | Molecular Function | 0.0 | - |
Sma3 | ubiquitin-dependent protein catabolic process | GO:0006511 | Biological Process | 0.0 | - |
Sma3 | modification-dependent protein catabolic process | GO:0019941 | Biological Process | 0.0 | - |
Sma3 | post-translational protein modification | GO:0043687 | Biological Process | 0.0 | - |
Sma3 | regulation of protein metabolic process | GO:0051246 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Ubiquitin-conjugating enzyme, E2 | IPR000608 | - | 0.0 | - |
Sma3 | Thioredoxin domain | IPR013766 | - | 0.0 | - |
Sma3 | Ubiquitin-conjugating enzyme/RWD-like | IPR016135 | - | 0.0 | - |
Sma3 | IPR017936 | - | 0.0 | - | |
Sma3 | Thioredoxin, conserved site | IPR017937 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT3G08690.1 | UBC11, ATUBC11 ubiquitin-conjugating enzyme 11 chr3:2641487-2642489 FORWARD LENGTH=148 | 2.0e-22 | 92% |
RefSeq | Arabidopsis thaliana | NP_001189841.1 | ubiquitin-conjugating enzyme E2 11 [Arabidopsis thaliana] | 2.0e-22 | 92% |
RefSeq | Populus trichocarpa | XP_002331848.1 | predicted protein [Populus trichocarpa] | 1.0e-23 | 97% |
Full-Lengther Next Prediction |
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Fln status: Putative N-terminus
Fln database: coniferopsida.fasta
Fln subject: C0PPR9
Fln msg: Distance to subject end: 88 aas, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 31 - 148
Fln protein:
M
Protein Length:
32
Fln nts:
C
Fln Alignment:
GFXCM5X02HJOZD___SAGPVADDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY
C0PPR9_______________SAGPVADDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain