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UniGene Name: sp_v3.0_unigene65853
Length: 215 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
 UniGene Fasta (sense)
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| >sp_v3.0_unigene65853
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Ace file of the UniGene sp_v3.0_unigene65853 (antisense)
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If you push the Download ace button, you will download an ace file of this UniGene.
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Go to the Tablet ACE viewer Web
| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Cellulose synthase n=13 Tax=core eudicotyledons RepID=B9IKV7_POPTR | - | - | 1.0e-14 | 92% |
| FL-Next | tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). | - | - | 0.0 | 79% |
| Sma3 | Cellulose synthase | - | - | 2.222e-34 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Cellulose synthase (UDP-forming). | EC:2.4.1.12 | - | 9.566e-22 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Starch and sucrose metabolism | 00500 | 9.566e-22 | % |
| Source | Gene names |
|---|---|
| Sma3 | ATHB; At2g25540; At5g05170; CESA; CESA1; CESA10; CESA13; CESA2; CESA3; CESA8; CESA9; CEV1; CesA; CesA-1; CesA-2; CesA-3; CesA-4; CesA-9; CesA1; CesA10; CesA11; CesA12; CesA2; CesA3; CesA4; CesA5; CesA6; CesA7; CesA8; ELI1; F13B15.20; GSVIVT00002977001; GS |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Golgi apparatus | GO:0005794 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | oxidoreductase activity | GO:0016491 | Molecular Function | 0.0 | - |
| Sma3 | cellulose synthase (UDP-forming) activity | GO:0016760 | Molecular Function | 0.0 | - |
| Sma3 | defense response | GO:0006952 | Biological Process | 0.0 | - |
| Sma3 | cellular cell wall organization | GO:0007047 | Biological Process | 0.0 | - |
| Sma3 | primary cell wall biogenesis | GO:0009833 | Biological Process | 0.0 | - |
| Sma3 | cellulose biosynthetic process | GO:0030244 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Pyridine nucleotide-disulphide oxidoreductase, class-II | IPR000103 | - | 0.0 | - |
| Sma3 | Zinc finger, RING-type | IPR001841 | - | 0.0 | - |
| Sma3 | Lipocalin | IPR002345 | - | 0.0 | - |
| Sma3 | Cellulose synthase | IPR005150 | - | 0.0 | - |
| Sma3 | Zinc finger, RING-type, conserved site | IPR017907 | - | 0.0 | - |
| Sma3 | Gonadotropin, beta subunit, conserved site | IPR018245 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT2G25540.1 | CESA10 cellulose synthase 10 chr2:10867070-10872077 REVERSE LENGTH=1065 | 1.0e-16 | 92% |
| RefSeq | Arabidopsis thaliana | NP_180124.1 | putative cellulose synthase A catalytic subunit 10 [UDP-forming] [Arabidopsis thaliana] | 2.0e-16 | 92% |
| RefSeq | Populus trichocarpa | XP_002324291.1 | cellulose synthase [Populus trichocarpa] | 5.0e-17 | 92% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: Q4VWW7
Fln msg: Overlapping hits, possible frame ERROR between 89 and 77, Distance to subject end: 79 aas, your sequence is shorter than subject: 71 - 1096
Fln protein:
S
Protein Length:
72
Fln nts:
T
Fln Alignment:
GFXCM5X02FWRA5___SAHLFAVFQGLLKVLAGIDTNFTxxxxxxDEDGEFAELYVFKWTSLLIP
Q4VWW7_______________SAHLFAVIQGLLKVLAGVDTNFTxxxxxxDEGGDFAELYIIKWTALLIP
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
