UniGene Name: sp_v3.0_unigene65791
Length: 207 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
---|
>sp_v3.0_unigene65791
A |
Ace file of the UniGene sp_v3.0_unigene65791 (antisense) |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Malate dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKL8_PINPS | - | - | 4.0e-24 | 96% |
FL-Next | sp=Malate dehydrogenase; Pinus pinaster (Maritime pine). | - | - | 0.0 | 96% |
Sma3 | Malate dehydrogenase | - | - | 0.0 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Malate dehydrogenase. | EC:1.1.1.37 | - | 0.0 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Citrate cycle (TCA cycle) | 00020 | 0.0 | % | |
Sma3 | Pyruvate metabolism | 00620 | 0.0 | % | |
Sma3 | Glyoxylate and dicarboxylate metabolism | 00630 | 0.0 | % | |
Sma3 | Methane metabolism | 00680 | 0.0 | % | |
Sma3 | Carbon fixation in photosynthetic organisms | 00710 | 0.0 | % | |
Sma3 | Carbon fixation pathways in prokaryotes | 00720 | 0.0 | % | |
Sma3 | Biosynthesis of phenylpropanoids | 01061 | 0.0 | % | |
Sma3 | Biosynthesis of terpenoids and steroids | 01062 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from shikimate pathway | 01063 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid | 01064 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from histidine and purine | 01065 | 0.0 | % | |
Sma3 | Biosynthesis of alkaloids derived from terpenoid and polyketide | 01066 | 0.0 | % | |
Sma3 | Biosynthesis of plant hormones | 01070 | 0.0 | % | |
Sma3 | Metabolic pathways | 01100 | 0.0 | % | |
Sma3 | Biosynthesis of secondary metabolites | 01110 | 0.0 | % |
Source | Gene names |
---|---|
Sma3 | At1g53240; At2g22780; At3g15020; At3g47520; At5g09660; B1088C09.38; CHLREDRAFT_126023; F12M16.14; F17I14_150; F1P2.70; GSVIVT00010647001; GSVIVT00020972001; GSVIVT00027787001; GSVIVT00035904001; GSVIVT00038538001; K15M2.16; LOC_Os03g56280; LOC_Os12g43630; |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | mitochondrial matrix | GO:0005759 | Cellular Component | 0.0 | - |
Sma3 | peroxisome | GO:0005777 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | glyoxysome | GO:0009514 | Cellular Component | 0.0 | - |
Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
Sma3 | L-malate dehydrogenase activity | GO:0030060 | Molecular Function | 0.0 | - |
Sma3 | carbohydrate metabolic process | GO:0005975 | Biological Process | 0.0 | - |
Sma3 | glycolysis | GO:0006096 | Biological Process | 0.0 | - |
Sma3 | glyoxylate cycle | GO:0006097 | Biological Process | 0.0 | - |
Sma3 | tricarboxylic acid cycle | GO:0006099 | Biological Process | 0.0 | - |
Sma3 | malate metabolic process | GO:0006108 | Biological Process | 0.0 | - |
Sma3 | response to cold | GO:0009409 | Biological Process | 0.0 | - |
Sma3 | response to salt stress | GO:0009651 | Biological Process | 0.0 | - |
Sma3 | regulation of fatty acid beta-oxidation | GO:0031998 | Biological Process | 0.0 | - |
Sma3 | defense response to bacterium | GO:0042742 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Sma3 | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Major intrinsic protein | IPR000425 | - | 0.0 | - |
Sma3 | Lactate/malate dehydrogenase, N-terminal | IPR001236 | - | 0.0 | - |
Sma3 | Malate dehydrogenase, active site | IPR001252 | - | 0.0 | - |
Sma3 | Aminoacyl-tRNA synthetase, class I, conserved site | IPR001412 | - | 0.0 | - |
Sma3 | L-lactate/malate dehydrogenase | IPR001557 | - | 0.0 | - |
Sma3 | Malate dehydrogenase, type 1 | IPR010097 | - | 0.0 | - |
Sma3 | Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | IPR015955 | - | 0.0 | - |
Sma3 | NAD(P)-binding domain | IPR016040 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G53240.1 | mMDH1 Lactate/malate dehydrogenase family protein chr1:19854966-19856802 REVERSE LENGTH=341 | 2.0e-26 | 82% |
RefSeq | Arabidopsis thaliana | NP_564625.1 | malate dehydrogenase 1 [Arabidopsis thaliana] | 3.0e-26 | 82% |
RefSeq | Populus trichocarpa | XP_002305754.1 | predicted protein [Populus trichocarpa] | 7.0e-27 | 85% |
Full-Lengther Next Prediction |
---|
Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: F4MKL8
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 155 aas, your sequence is shorter than subject: 59 - 354
Fln protein:
I
Protein Length:
60
Fln nts:
A
Fln Alignment:
GFXCM5X02HQX64___INAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGKVT
F4MKL8_______________INAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain