SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65789

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene65789
TGTGGTGAGGTTTCTCGCCTGAGACTGCTTGGAGATCATGTTCACTTCCACTTTTCGTATAGCATTTGTTGAATTTGTAATGGCTGAAAGTGCCATACTTGCATTGAACTGTAGTGGTGCAATTGTGGGATCTTTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTG

Ace file of the UniGene sp_v3.0_unigene65789

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	CID11	-	-	1.407e-16	-

Source	Gene names
Sma3	AT3G49390; AT4g10610; At1g32790; At1g53650; At3g14450; At3g49390; At4g10610; At5g24440; CGL28; CHLREDRAFT_144221; F22G10.7; F2K15.250; F3H7.12; GSVIVT00000500001; GSVIVT00001009001; GSVIVT00037183001; OSJNBa0016I09.34; Os01g0209400; Os02g0244600; Os08g011

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53650.1	CID8 CTC-interacting domain 8 chr1:20029262-20031243 REVERSE LENGTH=314	2.0e-15	81%
RefSeq	Arabidopsis thaliana	NP_174556.1	CTC-interacting domain 11 protein [Arabidopsis thaliana]	6.0e-16	89%
RefSeq	Populus trichocarpa	XP_002300503.1	predicted protein, partial [Populus trichocarpa]	3.0e-17	92%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG9

Fln msg: Separated hits, possible frame ERROR between 45 and 56, STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 57 - 288

Fln protein: CGEVSRLRLLGDHVxxxxxRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPV

Protein Length: 58

Fln nts: TGTGGTGAGGTTTCTCGCCTGAGACTGCTTGGAGATCATGTTCAxxxxxxxxxxxxTCGTATAGCATTTGTTGAATTTGTAATGGCTGAAAGTGCCATACTTGCATTGAACTGTAGTGGTGCAATTGTGGGATCTTTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTG

Fln Alignment:

GFXCM5X02G110N___CGEVSRLRLLGDHVHxxxxRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPV
A9NNG9_______________CGEVSRLRLLGDHVHxxxxRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain