SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65786

Length: 159 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65786
CTGCCATGGTTTTGCTCTGTTCGTGGCCGTGTCCATTGCGGCGAACATCTCCGGTGGCCACGTTAACCCGGCCGTCACGTTTGGGCTGGTCCTTGGTGGCCAGATCACCATTCTACAAAAGGCGTCGTTCTACTGGATTGCTCAGCTGGTTGGAGCAAT

Ace file of the UniGene sp_v3.0_unigene65786 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	delta-tonoplast intrinsic protein [Gossypium hirsutum]	-	-	2.0e-16	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Tonoplast intrinsic protein	-	-	2.112e-37	-

Source	Gene names
Sma3	25.t00032; 26.t00032; 31.t00034; AQP; AQP.1; AQP1; AQP5; AQP6; AT3G16240; Aqp1; At1g73190; At2g36830; At3g16240; At3g26520; At4g01470; At4g17340; At5g47450; C1275ERIPDM; CT179; DIP; F11O4.1; FCAALL.412; FavRB7; GSVIVT00000605001; GSVIVT00012703001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	-
Sma3	urea transmembrane transporter activity	GO:0015204	Molecular Function	-
Sma3	water channel activity	GO:0015250	Molecular Function	-
Sma3	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	urea transport	GO:0015840	Biological Process	-
Sma3	water homeostasis	GO:0030104	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Archaeal flagellin, N-terminal	IPR013373	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16240.1	" DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 delta tonoplast integral protein chr3:5505534-5506788 FORWARD LENGTH=250"	6.0e-22	76%
RefSeq	Arabidopsis thaliana	NP_188245.1	aquaporin TIP2-1 [Arabidopsis thaliana]	8.0e-22	76%
RefSeq	Populus trichocarpa	XP_002337227.1	predicted protein, partial [Populus trichocarpa]	3.0e-23	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT26

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 52 - 131

Fln protein: CHGFALFVAVSIAANISGGHVNPAVTFGLVLGGQITILQKASFYWIAQLVGA

Protein Length: 53

Fln nts: CTGCCATGGTTTTGCTCTGTTCGTGGCCGTGTCCATTGCGGCGAACATCTCCGGTGGCCACGTTAACCCGGCCGTCACGTTTGGGCTGGTCCTTGGTGGCCAGATCACCATTCTACAAAAGGCGTCGTTCTACTGGATTGCTCAGCTGGTTGGAGCAAT

Fln Alignment:

GFXCM5X02F654C___CHGFALFVAVSIAANISGGHVNPAVTFGLVLGGQITILQKASFYWIAQLVGA
C0PT26_______________CHGFALFVAVAIAANISGGHVNPAVTFGLVLGGQITIL-KGIFYWIAQLVGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain