SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65723

Length: 211 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65723
AAAGGACCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGGGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATTAGGACTGTGGATGCCTGCATCTGATACCGATTGAGAATTGCGCTTAAGGTAGTGAGCAAGATCAGTGCCCGGGAGCGGTTCGCCGT

Ace file of the UniGene sp_v3.0_unigene65723 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipase D n=3 Tax=Oryza sativa RepID=Q69P64_ORYSJ	-	-	2.0e-15	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Phospholipase D alpha	-	-	2.825e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase D.	EC:3.1.4.4	-	4.06e-30	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycerophospholipid metabolism	00564	4.06e-30	%
Sma3	Ether lipid metabolism	00565	4.06e-30	%
Sma3	Metabolic pathways	01100	4.06e-30	%

Source	Gene names
Sma3	At1g52570; At3g15730; F6D8.21; GSVIVT00000347001; GSVIVT00016906001; LOC_Os01g07760; LOC_Os03g27370; MSJ11.13; MtrDRAFT_AC149206g21v2; OJ1740_D06.16; OSJNBa0065F09.3; Os01g0172400; Os03g0391400; Os05g0171000; Os09g0421300; OsI_00588; OsI_18631; OsI_31401;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	clathrin-coated vesicle	GO:0030136	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phospholipase D activity	GO:0004630	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	NAPE-specific phospholipase D activity	GO:0070290	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-
Sma3	phosphatidylcholine metabolic process	GO:0046470	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15730.1	PLDALPHA1, PLD phospholipase D alpha 1 chr3:5330835-5333474 FORWARD LENGTH=810	2.0e-14	59%
RefSeq	Arabidopsis thaliana	NP_188194.1	phospholipase D alpha 1 [Arabidopsis thaliana]	3.0e-14	59%
RefSeq	Populus trichocarpa	XP_002327429.1	predicted protein [Populus trichocarpa]	3.0e-16	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV59

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 244 aas, your sequence is shorter than subject: 42 - 482

Fln protein: KDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWDRD*

Protein Length: 43

Fln nts: AAAGGACCAAGTAATAGACAAAAGCATCCAGTGCGCCTATATCGAAGCCATTCGCCGAGCCAGGGACTTCATTTACATACAGAACCAGTACTTCTTTGGCAGTTGCGCTTCTTGGGACCGAGATTAGGACTGTGGATGCCTGCATCTGATACCGATTGAGAATTGCGCTTAAGGTAGTGAGCAAGATCAGTGCCCGGGAGCGGTTCGCCGT

Fln Alignment:

GFXCM5X02HIAS9___KDQVIDKSIQCAYIEAIRRARDFIYIQNQYFFGSCASWDRD----*DCGCLHLIPIE
A9NV59_______________KDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYGWKPDDIKGQDIGALHLIPKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain