SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65717

Length: 268 nt

UniGene Fasta

>sp_v3.0_unigene65717
AGATTAGATCGCTACTTGCATCCACATTTCCGATATTACATGAGGGAAGTCCATACTGTTGTTTATTCTCAGTTTCTGGAATCCTACAGGAGTGCAACCATGGAGGCTATGGCAAGAGCTTTTGGTGTTAGTGTTGATTTTATCGACAGAGAACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACAGGCCGGATGCTAAAAATGCTCTCTATCAAGCAACTATCAAAC

Ace file of the UniGene sp_v3.0_unigene65717

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable 26S proteasome regulatory subunit (Fragment) n=11 Tax=Spermatophyta RepID=Q30HZ5_9CONI	-	-	1.00053e-42	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Probable 26S proteasome regulatory subunit	-	-	0.0	-

Source	Gene names
Sma3	sb46;

Source	GOs	Term	Type	e value	Identity
Sma3	cytosol	GO:0005829	Cellular Component	0.0	-
Sma3	protein complex	GO:0043234	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24820.1	" 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain chr4:12790471-12792599 REVERSE LENGTH=387"	86%
RefSeq	Arabidopsis thaliana	NP_567709.1	26S proteasome regulatory subunit N7 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002321676.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT48

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 89 - 386

Fln protein: RLDRYLHPHFRYYMREVHTVVYSQFLESYRSATMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIK

Protein Length: 90

Fln nts: AGATTAGATCGCTACTTGCATCCACATTTCCGATATTACATGAGGGAAGTCCATACTGTTGTTTATTCTCAGTTTCTGGAATCCTACAGGAGTGCAACCATGGAGGCTATGGCAAGAGCTTTTGGTGTTAGTGTTGATTTTATCGACAGAGAACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACAGGCCGGATGCTAAAAATGCTCTCTATCAAGCAACTATCAAAC

Fln Alignment:

GFXCM5X02JXT0E___RLDRYLHPHFRYYMREVHTVVYSQFLESYRSATMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIK
A9NT48_______________RLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain