SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65565

Length: 171 nt

UniGene Fasta

>sp_v3.0_unigene65565
TTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAAAAAATNTGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAGCAATTGAGGGTCAACATGAGCATAA

Ace file of the UniGene sp_v3.0_unigene65565

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Choline-phosphate cytidylyltransferase B n=3 Tax=Andropogoneae RepID=B6U468_MAIZE	-	-	5.0e-06	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	CCT;

Source	GOs	Term	Type	e value	Identity
Sma3	choline-phosphate cytidylyltransferase activity	GO:0004105	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ2

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 56 - 337

Fln protein: KETKRTEGISTSDIIMRMLKDYNEKICNAQLGSRLHKEGPWSQLCEGKQLRVNMSI

Protein Length: 57

Fln nts: TTAAGGAAACAAAACGTACTGAGGGTATCTCAACATCAGATATCATAATGCGCATGCTGAAAGACTACAATGAAAAAATaTGTAATGCGCAACTTGGCTCGAGGTTACACAAGGAAGGACCTTGGAGTCAGCTATGTGAAGGAAAGCAATTGAGGGTCAACATGAGCATAA

Fln Alignment:

GFXCM5X02HSKL1___KETKRTEGISTSDIIMRMLKDYNEKICNAQLGSRLHKEGPWSQLCEGKQLRVNMSI
B8LQQ2_______________KETKRTEGISTSDIIMRMLKDYNEYVMRNLARGYTRKDLGVSYVKE-KQLRVNMSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain