SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65548

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65548
CCACATTGTAATGAGCTTTCAAATTGATCACTAAATTCTTTAGTCTAAAATTCCAAACCAAGAGAATAATAATGAATCTTGGGCAAAATATTATCTCCTACTGGAAACAACAATCACATTTCCACTGCAGAAGACAGCAGTCTTGCTAAAAAACTGACAAATGAACCAAGTAAACAGAAGACCAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAACTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTG

Ace file of the UniGene sp_v3.0_unigene65548 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha tubulin-2A [Triticum aestivum] gb\|ABD92931.1\| alpha tubulin-2D [Triticum aestivum] gb\|ABD92932.1\| alpha tubulin-2B [Triticum aestivum]	-	-	1.0e-05	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Alpha tubulin	-	-	2.675e-16	-

Source	Gene names
Sma3	AT1; AT4G14960; ATUB3; ATub4; At1g04820; At1g64740; At4g14960; BYtuba; F13O11.5; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g51600; MtrDRAFT_AC170580g1v1; OSJNBa0013A09.14; OSJNBb

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 149 aas, your sequence is shorter than subject: 104 - 319

Fln protein: PHCNELSN*SLNSLV*NSKPRE***ILGKILSPTGNNNHISTAEDSSLAKKLTNEPSKQKTNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT

Protein Length: 105

Fln nts: CCACATTGTAATGAGCTTTCAAATTGATCACTAAATTCTTTAGTCTAAAATTCCAAACCAAGAGAATAATAATGAATCTTGGGCAAAATATTATCTCCTACTGGAAACAACAATCACATTTCCACTGCAGAAGACAGCAGTCTTGCTAAAAAACTGACAAATGAACCAAGTAAACAGAAGACCAACTGCACGGGTCTTCAAGGATTCCTCGTCTTCAACGCAGTTGGTGGAGGAACTGGTTCTGGTCTTGGTTCTCTTCTACTGGAACGTCTTTCAGTGGACTACGGCAAAAAATCCAAACTTGGATTCACTG

Fln Alignment:

GFXCM5X02G6U5F___KQKTNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXSVDYGKKSKLGFT
C0PRI6_______________KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain