SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65501

Length: 121 nt

UniGene Fasta

>sp_v3.0_unigene65501
CCCAATTTGCTTGAACTCGAGGCCCCTATCAACGATCTTTTGCGGTGATATACATGGTCAATATTCTGATCTATTAAGGCTGTTTGAGTATGGTGGCCTTCCGCCAGCAGTCAAATTATTT

Ace file of the UniGene sp_v3.0_unigene65501

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase n=3 Tax=Vitis vinifera RepID=C5DB65_VITVI	-	-	3.0e-07	95%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Serine/threonine protein phosphatase	-	-	9.2e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	46C02.14; At1g64040; B1144B06.13; F22C12.20; GSVIVT00020252001; GSVIVT00024227001; GSVIVT00033624001; MtrDRAFT_AC136139g21v2; NPP2; Os08g0455600; OsI_29460; OsJ_27552; P0048G02.50; PHYPADRAFT_95594; POPTRDRAFT_589596; PP1 beta; PP1 epsilon; RCOM_0608890;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA89

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 40 - 325

Fln protein: PICLNSRPLSTIFCGDIHGQYSDLLRLFEYGGLPPAVKLF

Protein Length: 41

Fln nts: CCCAATTTGCTTGAACTCGAGGCCCCTATCAACGATCTTTTGCGGTGATATACATGGTCAATATTCTGATCTATTAAGGCTGTTTGAGTATGGTGGCCTTCCGCCAGCAGTCAAATTATTT

Fln Alignment:

GFXCM5X02FON7M___CGDIHGQYSDLLRLFEYGGLPPA
D5AA89_______________CGDIHGQYSDLLRLFEYGGLPPS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain