SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65431

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene65431
CATAGAAGGATGGGGCACTTACACCATGGGGCTCTAAGAATTCTCAAAAGAACCGTCACAAGAGTTTCAGAATTAAGTACCAAATGAGATGATGTATGCAGACGTTGTGTACTAGGCAAGTACACCAAAGTGACTTATTCCGGAAGTAACAGTAGGGCAAAGAGTGTTTTGGGATTTATACACTCAGATATCCGCGGACCCATGTGCACAAAAGCTCTTAGTGGTGCTGAATACTTCG

Ace file of the UniGene sp_v3.0_unigene65431

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVT9_9POAL	-	-	2.0e-07	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 79 - 407

Fln protein: HRRMGHLHHGALRILKRTVTRVSELSTK*DDVCRRCVLGKYTKVTYSGSNSRAKSVLGFIHSDIRGPMCTKALSGAEYF

Protein Length: 80

Fln nts: CATAGAAGGATGGGGCACTTACACCATGGGGCTCTAAGAATTCTCAAAAGAACCGTCACAAGAGTTTCAGAATTAAGTACCAAATGAGATGATGTATGCAGACGTTGTGTACTAGGCAAGTACACCAAAGTGACTTATTCCGGAAGTAACAGTAGGGCAAAGAGTGTTTTGGGATTTATACACTCAGATATCCGCGGACCCATGTGCACAAAAGCTCTTAGTGGTGCTGAATACTTCG

Fln Alignment:

G5KS2UX02I1U4H___HRRMGHLHHGALRILKR--TVTRVSELSTK*DDVCRRCVLGK-YTKVTYSGSNSRAKSVLGFIHSDIRGPMCTKALSGAEY
B8LKX7_______________HERMGHLNYKSLSLMKRFEMVYGLPKISQS-QGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain