SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65414

Length: 148 nt

UniGene Fasta

>sp_v3.0_unigene65414
AATGTATGTTATGATTCTTGGACCTACTCAGTCTCCATATGAAGGTGGTGTTTTCAAGTTGGAGTTATTCTAAAGGATAAATGGAGCCCTGCTCTTTACAAATTCGAACAGTTTTGCTGAGCATCCAAGCATTGTTGAGTGCTCCCAA

Ace file of the UniGene sp_v3.0_unigene65414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 35 n=42 Tax=Embryophyta RepID=UBC35_ARATH	-	-	8.0e-10	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	Gene names
Sma3	At1g16890; At1g78870; CHLREDRAFT_129070; F17F16.19; F6I1.11; F9K20.8; GSVIVT00018730001; GSVIVT00027804001; Os01g0673600; OsI_03230; OsJ_02975; P0007F06.32; P0485G01.22; PHYPADRAFT_106208; PHYPADRAFT_170260; POPTRDRAFT_672515; POPTRDRAFT_822983; RCOM_0341

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	UBC13-MMS2 complex	GO:0031372	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16890.3	-	3.0e-12	100%
RefSeq	Arabidopsis thaliana	NP_001185017.1	ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana]	4.0e-12	100%
RefSeq	Populus trichocarpa	XP_002330723.1	predicted protein [Populus trichocarpa]	4.0e-12	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUN0

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 96 and 93, Distance to subject end: 35 aas, your sequence is shorter than subject: 49 - 153

Fln protein: MYVMILGPTQSPYEGGVFKLExxxKDKWSxxxxQIRTVLLSIQALLSAP

Protein Length: 50

Fln nts: AATGTATGTTATGATTCTTGGACCTACTCAGTCTCCATATGAAGGTGGTGTTTTCAAGTTGGAGxxxxxxxxxAAGGATAAATGGAGCCCxxxxxxxxxACAAATTCGAACAGTTTTGCTGAGCATCCAAGCATTGTTGAGTGCTCCCAA

Fln Alignment:

G5KS2UX02JSFC5___VMILGPTQSPYEGGVFKLELFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILKDKWSPxxQIRTVLLSIQALLSAP
A9NUN0_______________VMILGPTQSPYEGGVFKLELFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILKDKWSPxxQIRTVLLSIQALLSAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain