SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65407

Length: 173 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65407
TGCCTTCAACGGAACACCATATGTGCATGGTTGACCTTCTTGGCCGAGCTGGCTATTTCGATGAAGCACGAGACTTTATCAATAAAATGCCATTAAAGCCCGATGCTGGTGTGTGGAACTGTTTGCTTGCTGCCTGTCGAATACATAACAATATTGAACTTGGGGAACACATT

Ace file of the UniGene sp_v3.0_unigene65407 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9FJY7.1\|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520 dbj\|BAB10928.1\| selenium-binding protein-like [Arabidopsis thaliana] gb\|AED98224.1\| pentatricope	-	-	1.0e-15	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Putative pentatricopeptide (PPR) repeat-containing protein	-	-	5.109e-08	-

Source	Gene names
Sma3	At1g15510; At3g26782; At4g01030; At5g66520; B1032F05.19; F3I3.50; GSVIVT00000887001; GSVIVT00002188001; GSVIVT00002920001; GSVIVT00006516001; GSVIVT00007922001; GSVIVT00013634001; GSVIVT00016277001; GSVIVT00016451001; GSVIVT00018529001; GSVIVT00020997001;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:26551879-26553741 FORWARD LENGTH=620	1.0e-20	66%
RefSeq	Arabidopsis thaliana	NP_201453.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-20	66%
RefSeq	Populus trichocarpa	XP_002320193.1	predicted protein [Populus trichocarpa]	1.0e-20	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 57 - 644

Fln protein: PSTEHHMCMVDLLGRAGYFDEARDFINKMPLKPDAGVWNCLLAACRIHNNIELGEHI

Protein Length: 58

Fln nts: TGCCTTCAACGGAACACCATATGTGCATGGTTGACCTTCTTGGCCGAGCTGGCTATTTCGATGAAGCACGAGACTTTATCAATAAAATGCCATTAAAGCCCGATGCTGGTGTGTGGAACTGTTTGCTTGCTGCCTGTCGAATACATAACAATATTGAACTTGGGGAACACATT

Fln Alignment:

G5KS2UX02GWML2___PSTEHHMCMVDLLGRAGYFDEARDFINKMPLKPDAGVWNCLLAACRIHNNIELGEHI
B8LLJ0_______________PAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain