SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65389

Length: 164 nt

UniGene Fasta

>sp_v3.0_unigene65389
CGGGTCTCAAGTCATATCAATTGAATTGAAGCATAGGATTTTGAGTGCATTGTGCAAGCTTGCAGACCGGGACACACACCAAATAGCCCTGGAAGAGTTGGAAAAAATTGTTCATGGACTTTCACCTGAAGGGGTCTCAATATGCCTTTCGTGTCTGTATGACA

Ace file of the UniGene sp_v3.0_unigene65389

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potyviral helper component protease-interacting protein 2 n=2 Tax=Solanum RepID=Q84VS2_SOLTU	-	-	1.0e-10	66%
FL-Next	sp=Microtubule-associated protein TORTIFOLIA1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%
Sma3	Potyviral helper component protease-interacting protein 2	-	-	5.848e-06	-

Source	Gene names
Sma3	PHYPADRAFT_181442; hip2;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27060.1	TOR1, SPR2, CN ARM repeat superfamily protein chr4:13581581-13585070 REVERSE LENGTH=864	1.0e-12	56%
RefSeq	Arabidopsis thaliana	NP_194436.2	Microtubule-associated protein TORTIFOLIA1 [Arabidopsis thaliana]	2.0e-12	56%
RefSeq	Populus trichocarpa	XP_002316989.1	predicted protein [Populus trichocarpa]	4.0e-11	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T041

Fln msg: Distance to subject end: 777 aas, your sequence is shorter than subject: 54 - 864

Fln protein: GSQVISIELKHRILSALCKLADRDTHQIALEELEKIVHGLSPEGVSICLSCLYD

Protein Length: 55

Fln nts: CGGGTCTCAAGTCATATCAATTGAATTGAAGCATAGGATTTTGAGTGCATTGTGCAAGCTTGCAGACCGGGACACACACCAAATAGCCCTGGAAGAGTTGGAAAAAATTGTTCATGGACTTTCACCTGAAGGGGTCTCAATATGCCTTTCGTGTCTGTATGACA

Fln Alignment:

G5KS2UX02HZKCV___IELKHRILSALCKLADRDTHQIALEELEKIVHGLSPEGVSICLSCLYD
Q9T041_______________VELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain