SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65359

Length: 104 nt

UniGene Fasta

>sp_v3.0_unigene65359
AATGTGACTGTTCATAACGAAATTGGTGTGATTCAGCCTATTTTGTCAGAAATAGGTGAAATATGTAGGCAAAACAAAATTTTCCTTCACACTGATGCGGCTCA

Ace file of the UniGene sp_v3.0_unigene65359

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes	-	-	2.0e-06	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	PHYPADRAFT_123193;

Source	GOs	Term	Type	Identity
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cysteine desulfurase activity	GO:0031071	Molecular Function	-
Sma3	cysteine metabolic process	GO:0006534	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Cysteine desulfurase	IPR010240	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Cysteine desulfurase, NifS	IPR016454	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA74

Fln msg: Distance to subject end: 222 aas, your sequence is shorter than subject: 34 - 455

Fln protein: NVTVHNEIGVIQPILSEIGEICRQNKIFLHTDAA

Protein Length: 35

Fln nts: AATGTGACTGTTCATAACGAAATTGGTGTGATTCAGCCTATTTTGTCAGAAATAGGTGAAATATGTAGGCAAAACAAAATTTTCCTTCACACTGATGCGGCTCA

Fln Alignment:

G5KS2UX02HMVC8___VTVHNEIGVIQPILSEIGEICRQNKIFLHTDAA
D5AA74_______________MTVHNEIGVIQPI-EEIGEICRQNKIFLHTDAA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain