SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65355

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene65355
AATGTACAAGGGAGCTAAGGTTCTTATATTTAGCCAATTTACCCAAACTATAGCTTGGCTTAAGAATGAGTTTAAAGAGAAAGGCATCAATTATAGATTTATTAGCGGAGACATGCCTATGAAGAAGCGTGCACAAGCAATTGAAGCATTTCAGAAGGATCCACCAACTACTGTTTTCC

Ace file of the UniGene sp_v3.0_unigene65355

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKN3_PHYPA	-	-	2.0e-22	89%
FL-Next	tr=SNF2 family DNA-dependent ATPase; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	89%

Source	Gene names
Sma3	CHR1533; MICPUN_59710; PHYPADRAFT_67427;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RKN3

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 59 - 1267

Fln protein: MYKGAKVLIFSQFTQTIAWLKNEFKEKGINYRFISGDMPMKKRAQAIEAFQKDPPTTVF

Protein Length: 60

Fln nts: AATGTACAAGGGAGCTAAGGTTCTTATATTTAGCCAATTTACCCAAACTATAGCTTGGCTTAAGAATGAGTTTAAAGAGAAAGGCATCAATTATAGATTTATTAGCGGAGACATGCCTATGAAGAAGCGTGCACAAGCAATTGAAGCATTTCAGAAGGATCCACCAACTACTGTTTTCC

Fln Alignment:

G5KS2UX02FX979___YKGAKVLIFSQFTQTIAWLKNEFKEKGINYRFISGDMPMKKRAQAIEAFQKDPPTTVF
A9RKN3_______________HDGAKVLIFSQFMQTIAWLKAEFKKQGINYRFISGDMPMKKRAQAIEAFQKDPPTTVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain