SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65349

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene65349
AATGTACAACCGAGAGAGATTGCAGATACTGGTCAGTGACATCACCTTACTGGTGGTGGCTTATGCTCTGTACTTCTTTGCCTCTGCATATGGGCTTGCTTCTTTGATAAAGCTCTATGCCATCCCTCTCTTGATTGTTAATGGGTTCCTGGTACTCATCACCTACCTGCAGCATAC

Ace file of the UniGene sp_v3.0_unigene65349

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative microsomal omega-6 fatty acid desaturase (Fragment) n=1 Tax=Larix gmelinii var. gmelinii RepID=A4VBF9_9CONI	-	-	2.0e-18	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Omega-6 fatty acid desaturase	-	-	7.286e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water.	EC:1.14.19.-	-	1.493e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		1.493e-09	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		1.493e-09	%

Source	Gene names
Sma3	At3g12120; DLS2; FAD2; FAD2-1; FAD2-1B; FAD2-2; FAD2-4; Fad2; GmFAD2-1a; GmFAD2-1b; O6FAD; PHYPADRAFT_177086; PHYPADRAFT_178365; T21B14.6; T21B14_107; T23B7.6; fad2;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	omega-6 fatty acid desaturase activity	GO:0045485	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid desaturase, type 1	IPR005804	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12120.1	FAD2 fatty acid desaturase 2 chr3:3860592-3861743 REVERSE LENGTH=383	2.0e-17	64%
RefSeq	Arabidopsis thaliana	NP_001078140.1	omega-6 fatty acid desaturase, endoplasmic reticulum [Arabidopsis thaliana]	2.0e-17	64%
RefSeq	Populus trichocarpa	XP_002297660.1	predicted protein [Populus trichocarpa]	1.0e-14	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUQ3

Fln msg: Distance to subject end: 106 aas, your sequence is shorter than subject: 58 - 375

Fln protein: MYNRERLQILVSDITLLVVAYALYFFASAYGLASLIKLYAIPLLIVNGFLVLITYLQH

Protein Length: 59

Fln nts: AATGTACAACCGAGAGAGATTGCAGATACTGGTCAGTGACATCACCTTACTGGTGGTGGCTTATGCTCTGTACTTCTTTGCCTCTGCATATGGGCTTGCTTCTTTGATAAAGCTCTATGCCATCCCTCTCTTGATTGTTAATGGGTTCCTGGTACTCATCACCTACCTGCAGCATAC

Fln Alignment:

G5KS2UX02F89N8___MYN-RERLQILVSDITLLVVAYALYFFASAYGLASLIKLYAIPLLIVNGFLVLITYLQH
A9NUQ3_______________IYNDRERLQILVSDIALLAVAYALYLFGSTYGLASLIKLYAIPLLIVNGFLVLITYLQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain