SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65330

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene65330
CCACTAAGCATGGAAATGACTGTGTTTTTGTGGTTGTTGACAAGTTCTTGAAGATGGCCATTATGGTGGCCTGCAAGAAGAATATCACAGCAGAAGCCACTGCTAAACTCTTCTTTGAACGAGTGTGGGTACACTTTGGGATCCCACAGTCTATCATCTCAGATTGGGACAGCAGGTTCCTCAGTACATTTTGGTCCAGTCTCTGGTCGATGTTGGACACCAAACTCACTAAGTCCACAACCTTCCATCCTCAAACTGATGGCCAGATAGAGGTTGTTAATAGGATGATTACATT

Ace file of the UniGene sp_v3.0_unigene65330 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	4.0e-26	58%
FL-Next	tr=Integrase core domain containing protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	58%
Sma3	Gag-Pol polyprotein	-	-	8.634e-13	-

Source	Gene names
Sma3	18.t00011; 19.t00019; AT4g07850; At2g06190; F5K24.1; LOC_Os03g35326; LOC_Os10g16560; LOC_Os10g20440; OJ1122_B08.16; OSJNAa0082N11.12; OSJNBa0003M24.1; OSJNBa0022B03.13; OSJNBa0034E23.18; OSJNBa0038J12.13; OSJNBa0045C13.1; OSJNBa0053F13.6; OSJNBa0095C12.16

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2AA43

Fln msg: Distance to subject end: 262 aas, your sequence is shorter than subject: 97 - 870

Fln protein: TKHGNDCVFVVVDKFLKMAIMVACKKNITAEATAKLFFERVWVHFGIPQSIISDWDSRFLSTFWSSLWSMLDTKLTKSTTFHPQTDGQIEVVNRMIT

Protein Length: 98

Fln nts: CCACTAAGCATGGAAATGACTGTGTTTTTGTGGTTGTTGACAAGTTCTTGAAGATGGCCATTATGGTGGCCTGCAAGAAGAATATCACAGCAGAAGCCACTGCTAAACTCTTCTTTGAACGAGTGTGGGTACACTTTGGGATCCCACAGTCTATCATCTCAGATTGGGACAGCAGGTTCCTCAGTACATTTTGGTCCAGTCTCTGGTCGATGTTGGACACCAAACTCACTAAGTCCACAACCTTCCATCCTCAAACTGATGGCCAGATAGAGGTTGTTAATAGGATGATTACATT

Fln Alignment:

G5KS2UX02F1WNY___KHGNDCVFVVVDKFLKMAIMVACKKNITAEATAKLFFERVWVHFGIPQSIISDWDSRFLSTFWSSLWSMLDTKLTKSTTFHPQTDGQIE-VVNRMI
Q2AA43_______________KCGHDYLYIVVDRFSKVVILIPCKKTVTGVGAAQLFFEHVWKHFGLPSLIILDRDSRFLGHFWDSLWSLMDTKLKKSMAFHPQTDGQTEFTFNRAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain