SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65286

Length: 193 nt

UniGene Fasta

>sp_v3.0_unigene65286
AATGTTACAGGGATGGCACAAGGCAAACAAGTGGCTGTGTTTCTAGACTATGATGGAACACTTTCTCCCATTGTTGAAGATCCTGATAATGCATTCATGTCTGATGAGATGAGAAGTGCTCTAAGGGATGTGGCCAAACATTTTCCAACAGCAATTATCACAGGCAGGTGCAGGGACAAGGTGTTTGAATTTG

Ace file of the UniGene sp_v3.0_unigene65286

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0624600 protein n=2 Tax=Oryza sativa RepID=Q7XI41_ORYSJ	-	-	7.0e-21	73%
FL-Next	sp=Probable trehalose-phosphate phosphatase 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	73%
Sma3	Sister of ramosa 3	-	-	4.523e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Trehalose-phosphatase.	EC:3.1.3.12	-	1.356e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.356e-18	%

Source	Gene names
Sma3	117M18_9; 80A08_8; AT4G22590; AT4g12430; AT4g22590; AT4g39770; At1g35910; At1g78090; At2g22190; At4g12430; At4g12430/T1P17.20; At4g22590; At4g39770; At4g39770/T19P19_160; At5g51460; At5g65140; AtTPPA; AtTPPB; CHLREDRAFT_60124; F10O5.8; F16L1.6; GSVIVT0000

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	trehalose-phosphatase activity	GO:0004805	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Transaldolase	IPR001585	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22590.1	TPPG Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr4:11893707-11895371 REVERSE LENGTH=377	1.0e-24	66%
RefSeq	Arabidopsis thaliana	NP_193990.1	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	2.0e-24	66%
RefSeq	Populus trichocarpa	XP_002307388.1	predicted protein [Populus trichocarpa]	3.0e-27	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XI41

Fln msg: Distance to subject end: 212 aas, your sequence is shorter than subject: 64 - 366

Fln protein: NVTGMAQGKQVAVFLDYDGTLSPIVEDPDNAFMSDEMRSALRDVAKHFPTAIITGRCRDKVFEF

Protein Length: 65

Fln nts: AATGTTACAGGGATGGCACAAGGCAAACAAGTGGCTGTGTTTCTAGACTATGATGGAACACTTTCTCCCATTGTTGAAGATCCTGATAATGCATTCATGTCTGATGAGATGAGAAGTGCTCTAAGGGATGTGGCCAAACATTTTCCAACAGCAATTATCACAGGCAGGTGCAGGGACAAGGTGTTTGAATTTG

Fln Alignment:

G5KS2UX02HWXM9___NVTGMAQGKQVAVFLDYDGTLSPIVEDPDNAFMSDEMRSALRDVAKHFPTAIITGRCRDKVFEF
Q7XI41_______________SVAAAAKGKEIVVFLDYDGTLSPIVADPDRAFMSDEMREAVRGVAKHFPTAIVSGRCIDKVFDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain