SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65275

Length: 196 nt

UniGene Fasta

>sp_v3.0_unigene65275
AATGTCATATTGTACATGTTACAGCTGAAATGGCTCCCATAGCAAAGGTCGGTGGGTTAGGTGATGTTGTTACTGGTCTTGGAAGAGCTTGTCTAAATAGAGGACATAGAGTGGAAGTAATGCTTCCTTTCTATGAATGCAAAAATTCAGAAGGATCAGATAAATGATTTGACTCTTTCAGACACATACTCATCAT

Ace file of the UniGene sp_v3.0_unigene65275

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Starch synthase VI n=1 Tax=Picea glauca RepID=B8YDY5_PICGL	-	-	1.0e-14	67%
FL-Next	tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	91%
Sma3	Starch synthase VI	-	-	5.732e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Starch synthase.	EC:2.4.1.21	-	2.442e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		2.442e-18	%
Sma3	Metabolic pathways	01100		2.442e-18	%

Source	Gene names
Sma3	AT4g18240; At4g18240; CHLREDRAFT_185710; GSVIVT00003411001; GSVIVT00010759001; GSVIVT00017037001; H0215F08.14; MICPUCDRAFT_36395; MICPUCDRAFT_46038; MICPUCDRAFT_51899; MICPUN_104780; MICPUN_104863; MICPUN_105006; OSJNBa0053K19.19; OSJNBa0056O06.4-1; OSTLU

Source	GOs	Term	Type	Identity
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	starch synthase activity	GO:0009011	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	glucan biosynthetic process	GO:0009250	Biological Process	-
Sma3	starch biosynthetic process	GO:0019252	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3		IPR009756	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002331426.1	predicted protein [Populus trichocarpa]	2.0e-11	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8YDY5

Fln msg: Overlapping hits, possible frame ERROR between 152 and 145, Distance to subject end: 438 aas, your sequence is shorter than subject: 65 - 655

Fln protein: CHIVHVTAEMAPIAKVGGLGDVVTGLGRACLNRGHRVEVMLPFYECKxxxxDQINDLTLSDTYSS

Protein Length: 66

Fln nts: AATGTCATATTGTACATGTTACAGCTGAAATGGCTCCCATAGCAAAGGTCGGTGGGTTAGGTGATGTTGTTACTGGTCTTGGAAGAGCTTGTCTAAATAGAGGACATAGAGTGGAAGTAATGCTTCCTTTCTATGAATGCAAAxxxxxxxxxxxxGATCAGATAAATGATTTGACTCTTTCAGACACATACTCATCAT

Fln Alignment:

G5KS2UX02F82VC___HIVHVTAEMAPIAKXXXXXXXXXXXXRACLNRGHRVEVMLPFYECxxxxQINDLTLSDTYSS
B8YDY5_______________HIVHVTAEMAPIAKVGGLGDVVTGLGRACLHRGHRVEVMLPFYECxxxxQINDLTLSDTYSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain