SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65233

Length: 277 nt

UniGene Fasta

>sp_v3.0_unigene65233
GCTGGCGGAATTCACACTGGACGGTAGCAGCAACCACGACTTCTACGACGTCTCGCTCGTTGACGGCTACAACCTGCCGCTCGACATAACTCCTTCGACTACGGCTACCACTGATTCTGCGGCTTCGAATTCCAGTAGCAGCACAAATTGCCGCAGGGTGGGTTGTGACAGTGACCTGCGCGACAGCTGCCCCAGCGAGCTGGCCGTGCGAGCCGGTGGCCTGGTGGCATGCAAGAGCGCCTGCGATGCCTTCAATACGTCTGAGTATTGCTGTACC

Ace file of the UniGene sp_v3.0_unigene65233

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thaumatin-like protein (Fragment) n=6 Tax=Picea RepID=E5G705_PICAB	-	-	4.0e-29	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Thaumatin family protein, expressed	-	-	4.04e-08	-

Source	Gene names
Sma3	AT1G75800; At1g75800; Cry j 3.5; GSVIVT00015335001; GSVIVT00019204001; LOC_Os03g14030; LOC_Os10g05600; LOC_Os10g05660; OSJNBa0030B02.12; OSJNBa0030B02.15; Os03g0243900; Os10g0146200; OsI_10720; OsI_23111; OsI_24471; OsI_37712; OsJ_30716; OsJ_30720; P0481E

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein chr1:28458889-28460447 FORWARD LENGTH=330	4.0e-22	51%
RefSeq	Arabidopsis thaliana	NP_177708.1	pathogenesis-related thaumatin-like protein [Arabidopsis thaliana]	6.0e-22	51%
RefSeq	Populus trichocarpa	XP_002301005.1	predicted protein, partial [Populus trichocarpa]	4.0e-25	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP27

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 92 - 246

Fln protein: LAEFTLDGSSNHDFYDVSLVDGYNLPLDITPSTTATTDSAASNSSSSTNCRRVGCDSDLRDSCPSELAVRAGGLVACKSACDAFNTSEYCCT

Protein Length: 93

Fln nts: GCTGGCGGAATTCACACTGGACGGTAGCAGCAACCACGACTTCTACGACGTCTCGCTCGTTGACGGCTACAACCTGCCGCTCGACATAACTCCTTCGACTACGGCTACCACTGATTCTGCGGCTTCGAATTCCAGTAGCAGCACAAATTGCCGCAGGGTGGGTTGTGACAGTGACCTGCGCGACAGCTGCCCCAGCGAGCTGGCCGTGCGAGCCGGTGGCCTGGTGGCATGCAAGAGCGCCTGCGATGCCTTCAATACGTCTGAGTATTGCTGTACC

Fln Alignment:

G5KS2UX02JOX33___LAEFTLDGSSNHDFYDVSLVDGYNLPLDIXXXXXXXXXXXXXXXXXXXNCRRVGCDSDLRDSCPSELAVRA--GGLVACKSACDAFNTSEYCCT
B8LP27_______________LAEFTIGGDAGKDFYDVSLVDGYNVPLSI------------RAAGGTGDCRTAGCSSDLRSSCPAELSVKGSDGRVIACRSACNAFGSAEYCCT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain