SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene65225

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene65225
AATGTTGCTTCTGTGTTGGGGGCCTTGCTTAGTGCTTGCAGAACTCATGGTAATTTGGAGTATAGGAACACGAGCAGCTGAACGGCTATTCAAATTGGAACCCAATAACTCTGGAAATTATGTGCTGCTGTCAAACATCTATGCTGCCGCAGGCAGATGGCAAGATGTGTCAAAGGTGAGAAGAATGATGGA

Ace file of the UniGene sp_v3.0_unigene65225

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9FLZ9.1\|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350 dbj\|BAB11009.1\| selenium-binding protein-like [Arabidopsis thaliana] gb\|AED94423.1\| pentatricope	-	-	2.0e-10	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Gene names
Sma3	GSVIVT00014293001; GSVIVT00032298001; MtrDRAFT_AC157473g23v2; VITISV_016538; VITISV_032319;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39350.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:15750929-15752962 FORWARD LENGTH=677	2.0e-14	55%
RefSeq	Arabidopsis thaliana	NP_198751.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-14	55%
RefSeq	Populus trichocarpa	XP_002330010.1	predicted protein [Populus trichocarpa]	2.0e-12	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 63 - 246

Fln protein: MLLLCWGPCLVLAELMVIWSIGTRAAERLFKLEPNNSGNYVLLSNIYAAAGRWQDVSKVRRMM

Protein Length: 64

Fln nts: AATGTTGCTTCTGTGTTGGGGGCCTTGCTTAGTGCTTGCAGAACTCATGGTAATTTGGAGTATAGGAACACGAGCAGCTGAACGGCTATTCAAATTGGAACCCAATAACTCTGGAAATTATGTGCTGCTGTCAAACATCTATGCTGCCGCAGGCAGATGGCAAGATGTGTCAAAGGTGAGAAGAATGATGGA

Fln Alignment:

G5KS2UX02FWIVL___WGPCLVLAELMVIWSIGTRAAERLFKLEPNNSGNYVLLSNIYAAAGRWQDVSKVRRMM
D5AAE0_______________WGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain